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...cttatatatagctattttagttaagagatgctctgtataaataataacataatgcctcgtagtatgttctgacttctgaactttctttactaccctgcagATGCAAAGAGGCCACGCTGAG
species | Zea mays |
transcript | GRMZM2G024733_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTATGGCAATAATTTATATGGGTGGGCGCCTTCCCCAGATTTTGTTAAAC ATGCAAAGAGGCCACGCTGAGEST: gi|60396257|gb|DN229126.1|DN229126
genomic: CTATGGCAATAATTTATATGGGTGGGCGCCTTCCCCAGATTTTGTTAAACgtgagacttc ... taccctgcagATGCAAAGAGGCCACGCTGAG
EST: CTATGGCAATAATTTATATGGGTGGGCGCCTTCCCCAGATTTTGTTAAAC ATGCAAAGAGGCCACGCTGAGEST: gi|76288324|gb|DV027892.1|DV027892
genomic: CTATGGCAATAATTTATATGGGTGGGCGCCTTCCCCAGATTTTGTTAAACgtgagacttc ... taccctgcagATGCAAAGAGGCCACGCTGAG
EST: CTATGGCAATAATTTATATGGGTGGGCGCCTTCCCCAGATTTTGTTAAAC ATGCAAAGAGGCCACGCTGAGEST: gi|71764376|gb|DR962313.1|DR962313
genomic: CTATGGCAATAATTTATATGGGTGGGCGCCTTCCCCAGATTTTGTTAAACgtgagacttc ... taccctgcagATGCAAAGAGGCCACGCTGAG
EST: CCAGATTTTGTTAAAC ATGCAAAGAGGCCACGCTGAGEST: gi|78026532|gb|DV494919.1|DV494919
genomic: CCAGATTTTGTTAAACgtgagacttc ... taccctgcagATGCAAAGAGGCCACGCTGAG
EST: CCCAGATTTTGTTAAAC ATGCAAAGAGGCCACGCTGAG
genomic: CCCAGATTTTGTTAAACgtgagacttc ... taccctgcagATGCAAAGAGGCCACGCTGAG
aacataatgcctcgtagtatgttctgacttctgaactttctttactaccctgcagATGCAAAGAGGCCACGCTGAG
ctttctttactaccct CT-rich tract
tttcttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttatatatagctattttagttaagagatgctctgtataaataataacataatgcctcgtagtatgttctgacttctgaactttctttactaccctgcagATGCAAAGAGGCCACGCTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG