1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgatgcttgttggacataaaatcagctgagcttgctcccaagtagagttgcctgagtttttactaactgaatgtgttggttgggtccagGACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATAATGGGGCCCGAGAGACTGCAGGAAGTTGGGTCCTGCCTGACCATGGACA
species | Zea mays |
transcript | GRMZM2G022997_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAG GACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATAEST: gi|211369658|gb|FL316930.1|FL316930
genomic: TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAGgtgatgcttg ... ttgggtccagGACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA
EST: TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAG GACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATAEST: gi|211101728|gb|FL471161.1|FL471161
genomic: TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAGgtgatgcttg ... ttgggtccagGACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA
EST: TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAG GACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA
genomic: TCAGGATTGAAATGACGTTCAGTCGTGGCGCCGATCTCAGTCCCCTAGAGgtgatgcttg ... ttgggtccagGACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATA
ctcccaagtagagttgcctgagtttttactaactgaatgtgttggttgggtccagGACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATAATGGGGCCCGAGAGACTGCAGGAAGTTGGGTCCTGCCTGACCATGGACA
tactaac putative branch site (score: 127)
tttttactaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatgcttgttggacataaaatcagctgagcttgctcccaagtagagttgcctgagtttttactaactgaatgtgttggttgggtccagGACAAAACCAGTGAAAGTTCTTCCTTGCTCCAGGAGCACACCTTGCCCATAATGGGGCCCGAGAGACTGCAGGAAGTTGGGTCCTGCCTGACCATGGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA