1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
...ttgcacagcctcattcagttctttgctgttatcatccagcatgggggcatttgtttttaacactggactattcatgtccttatcttatgctcattttcagGACATATTACTTAGAGATCAAGGTAGCGCAAGTGGGGGGTTCTCAAAGAGTCAGAAAGAAATTGTTAAGCAACACATATCCCACAGGCTCAGATTTTCAT
species | Zea mays |
transcript | GRMZM2G021864_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGATGAATGATGATGGCCTTTTGGAACTTGACTTTGAGGATGATGATGAG GACATATTACTTAGAGATCAAGGTAGCGCAAGTGGGGGGTTCTCAAAGAGTEST: gi|78106768|gb|DV525186.1|DV525186
genomic: GGATGAATGATGATGGCCTTTTGGAACTTGACTTTGAGGATGATGATGAGgtgtgttcat ... tcattttcagGACATATTACTTAGAGATCAAGGTAGCGCAAGTGGGGGGTTCTCAAAGAGT
EST: GGATGAATGATGATGGCCTTTTGGAACTTGACTTTGAGGATGATGATGAG GACATATTACTTAGAGATCAAGGTAGCGCAAGTGGGGGGTTCTCAAAGAGT
genomic: GGATGAATGATGATGGCCTTTTGGAACTTGACTTTGAGGATGATGATGAGgtgtgttcat ... tcattttcagGACATATTACTTAGAGATCAAGGTAGCGCAAGTGGGGGGTTCTCAAAGAGT
ggcatttgtttttaacactggactattcatgtccttatcttatgctcattttcagGACATATTACTTAGAGATCAAGGTAGCGCAAGTGGGGGGTTCTCAAAGAGTCAGAAAGAAATTGTTAAGCAACACATATCCCACAGGCTCAGATTTTCAT
ttttaac putative branch site (score: 168)
ctcattttc putative PPT
ttgtttttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ttgcacagcctcattcagttctttgctgttatcatccagcatgggggcatttgtttttaacactggactattcatgtccttatcttatgctcattttcagGACATATTACTTAGAGATCAAGGTAGCGCAAGTGGGGGGTTCTCAAAGAGTCAGAAAGAAATTGTTAAGCAACACATATCCCACAGGCTCAGATTTTCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- gcacagc
- - - - - -cattcag
- - - - - - - - - - - -tgctgtt
- - - - - - - - - - - - - - - - - - cagcatg
- - - - - - - - - - - - - - - - - - - - - - - gcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cactgga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -attcatg