1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtaagagaataccgaaagacttaatttcaagccatggttgttagcaaacctgcatgctgtgtttctaacacggaatcaaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAGCGATTCAAGAGCAAGGGCGAGGAAGG
species | Zea mays |
transcript | GRMZM2G021378_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGACGGGGGAGCGTGCTGATGAAGAG ACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAEST: gi|78109316|gb|DV527732.1|DV527732
genomic: TGACGGGGGAGCGTGCTGATGAAGAGgtaagagaat ... caaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGA
EST: TGACGGGGGAGCGTGCTGATGAAGAG ACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAEST: gi|76289341|gb|DV028909.1|DV028909
genomic: TGACGGGGGAGCGTGCTGATGAAGAGgtaagagaat ... caaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGA
EST: TGACGGGGGAGCGTG-TGATGAAGAG ACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAEST: gi|76928325|gb|DV171578.1|DV171578
genomic: TGACGGGGGAGCGTGCTGATGAAGAGgtaagagaat ... caaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGA
EST: TGACGGGGGAGCGTGCTGATGAAGAG ACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAEST: gi|76289342|gb|DV028910.1|DV028910
genomic: TGACGGGGGAGCGTGCTGATGAAGAGgtaagagaat ... caaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGA
EST: TGACGGGGGAGCGTGCTGATGAAGAG ACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAEST: gi|78124413|gb|DV542797.1|DV542797
genomic: TGACGGGGGAGCGTGCTGATGAAGAGgtaagagaat ... caaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGA
EST: TGACGGGGGAGCGTGGTGATGAAGAG ACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAEST: gi|78075706|gb|DV504140.1|DV504140
genomic: TGACGGGGGAGCGTGCTGATGAAGAGgtaagagaat ... caaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGA
EST: TGACGGGGGAGCGTGCTGATGAAGAG ACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAEST: gi|71320028|gb|DR796779.1|DR796779
genomic: TGACGGGGGAGCGTGCTGATGAAGAGgtaagagaat ... caaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGA
EST: TGACGGGGGAGCGTGCTGATGAAGAG ACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCEST: gi|78109317|gb|DV527733.1|DV527733
genomic: TGACGGGGGAGCGTGCTGATGAAGAGgtaagagaat ... caaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTC
EST: TGACGGGGGAGCGTGCTGATGAAGAG ACAATCGACAAGCTGATAGAAACAGGCGACGGC
genomic: TGACGGGGGAGCGTGCTGATGAAGAGgtaagagaat ... caaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGC
ccatggttgttagcaaacctgcatgctgtgtttctaacacggaatcaaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAGCGATTCAAGAGCAAGGGCGAGGAAGG
ttctaac putative branch site (score: 71)
aatcaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagagaataccgaaagacttaatttcaagccatggttgttagcaaacctgcatgctgtgtttctaacacggaatcaaaactcagACAATCGACAAGCTGATAGAAACAGGCGACGGCGAGCAAATCTTTCAGAGAGCGATTCAAGAGCAAGGGCGAGGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG