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...aaaatatcttgtaagttggaaccgagggagtacatattttcccagtttggcatgctttgtatatgcaggatcaacactaaatgtgcaaactgattttcagCCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTCATCAACAAAGAGCTGATACTCTTCTCAATGGCGGACCTGCAGCGATCAA
species | Zea mays |
transcript | GRMZM2G021270_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAG CCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGGGATTTCEST: gi|18963118|gb|BM660250.1|BM660250
genomic: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAGgttagctctc ... tgattttcagCCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTC
EST: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAG CCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTCEST: gi|31354680|gb|CD439037.1|CD439037
genomic: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAGgttagctctc ... tgattttcagCCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTC
EST: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAG CCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTCEST: gi|18655210|gb|BM500015.1|BM500015
genomic: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAGgttagctctc ... tgattttcagCCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTC
EST: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAG CCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTCEST: gi|18662206|gb|BM501800.1|BM501800
genomic: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAGgttagctctc ... tgattttcagCCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTC
EST: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAG CCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTCEST: gi|18661837|gb|BM501604.1|BM501604
genomic: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAGgttagctctc ... tgattttcagCCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTC
EST: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAG CCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTC
genomic: TCAGCAAGAAACGGATTGCTGATAGGAAACAGTGGCTTACAAATTTTCAGgttagctctc ... tgattttcagCCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTC
tttggcatgctttgtatatgcaggatcaacactaaatgtgcaaactgattttcagCCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTCATCAACAAAGAGCTGATACTCTTCTCAATGGCGGACCTGCAGCGATCAA
ttttc CT-rich tract
tttgtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaaatatcttgtaagttggaaccgagggagtacatattttcccagtttggcatgctttgtatatgcaggatcaacactaaatgtgcaaactgattttcagCCTGGAACATACATAGACCAACGTGAGAAACAAGTCAAGTATAGTGATTTCATCAACAAAGAGCTGATACTCTTCTCAATGGCGGACCTGCAGCGATCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atgcagg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atcaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aatgtgc