Sequence
atgc intronic sequence ATGC exonic sequence...gaacttgagggagtaactcttatatatttttatttatcaatgcatcctatttatagtgatgttacattgctaacattatgatactttacttgaatggcagAATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGAGTTAATGGTGATGGGCGACGGTATAAACTCATTATACGGACTAGCTATG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G019358_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g13970.2 (Oryza sativa), 3'ss of exon 9
----gaact-tgagggagtaactcttatatatttttatttatcaatgcatcctatttatagtgatgttacattgctaacattatgatactttacttgaatggcagAATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGAGTTAATGGTGATGGGCGACGGTATAAACTCATTATACGGACTAGCTATG
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tcataaacagcgagtggcaaataattaattgccacatcttaaaagtggtacaaagtta----aatgtccc-taactattattgtgatatgttactctgattgcagAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTGMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|13249799|gb|BG360704.1|BG360704EST: GGACTGTATCTACTTCAAATAATGGTGGGTTTACTAGTATAAGGACAAAG AATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGA
genomic: GGACTGTATCTACTTCAAATAATGGTGGGTTTACTAGTATAAGGACAAAGgtagttactt ... tgaatggcagAATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cctatttatagtgatgttacattgctaacattatgatactttacttgaatggcagAATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGAGTTAATGGTGATGGGCGACGGTATAAACTCATTATACGGACTAGCTATG
tgctaac putative branch site (score: 1)
ctttactt putative PPT
attatgatacttta TA-rich tract