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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gaacttgagggagtaactcttatatatttttatttatcaatgcatcctatttatagtgatgttacattgctaacattatgatactttacttgaatggcagAATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGAGTTAATGGTGATGGGCGACGGTATAAACTCATTATACGGACTAGCTATG

Basic information

species Zea mays
transcript GRMZM2G019358_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G019358_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os02g13970.2 (Oryza sativa), 3'ss of exon 9
----gaact-tgagggagtaactcttatatatttttatttatcaatgcatcctatttatagtgatgttacattgctaacattatgatactttacttgaatggcagAATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGAGTTAATGGTGATGGGCGACGGTATAAACTCATTATACGGACTAGCTATG
     |||   ||| |   ||   |||  |        |||  | ||   |  | |||     ||||  | |  |||  ||| |||||  |||||   || |||||||||||| ||||| ||||| |||||||||||||| ||||||||  |||| ||||| ||||| ||| | ||||||||||| ||| | || ||||||| ||
tcataaacagcgagtggcaaataattaattgccacatcttaaaagtggtacaaagtta----aatgtccc-taactattattgtgatatgttactctgattgcagAATTTTACAGTGCCTGAGGATCTGTCAGCATATGACGGTATTGAACTACGTGTTAAGGGTGACGGGAGGCGGTATAAACTTATTGTGCGCACTAGCTTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|13249799|gb|BG360704.1|BG360704
EST:     GGACTGTATCTACTTCAAATAATGGTGGGTTTACTAGTATAAGGACAAAG                         AATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGA
genomic: GGACTGTATCTACTTCAAATAATGGTGGGTTTACTAGTATAAGGACAAAGgtagttactt ... tgaatggcagAATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctatttatagtgatgttacattgctaacattatgatactttacttgaatggcagAATTTTACTGTGCCAGAGGACCTGTCAGCATATGATGGTATTGAGTTACGAGTTAATGGTGATGGGCGACGGTATAAACTCATTATACGGACTAGCTATG
                      tgctaac  putative branch site (score: 1)
                                      ctttactt  putative PPT
                             attatgatacttta  TA-rich tract