1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gcatctcactgacagttccataaatgcagaaaaaatgctgctttcttattttacaaactcagttttcttgtagctcatcttggtgtattcgttttaacagGATGTGAGTCCAAAACGCTTATGCTTGTTCATATCCGTCCAAATGAGGATGATTTGTGTGAGAGCATCTGTACCTTGGGTTTTGCGACAAGAGTCAGAAG
species | Zea mays |
transcript | GRMZM2G018951_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCGGATGTCATAGATGCACTACAGACCAAAAAATCCCACATCCCTTATAG GATGTGAGTCCAAAACGCTTATGCTTGTTCATATCCGTCCAAATGAGGATGEST: gi|78075197|gb|DV503631.1|DV503631
genomic: GCGGATGTCATAGATGCACTACAGACCAAAAAATCCCACATCCCTTATAGgtaaataaaa ... gttttaacagGATGTGAGTCCAAAACGCTTATGCTTGTTCATATCCGTCCAAATGAGGATG
EST: GCGGATGTCATAGATGCACTACAGACCAAAAAATCCCACATCCCTTATAG GATGTGAGTCCAAAACGCTTATGCTTGTTCATATCCGTCCAAATGAGGATG
genomic: GCGGATGTCATAGATGCACTACAGACCAAAAAATCCCACATCCCTTATAGgtaaataaaa ... gttttaacagGATGTGAGTCCAAAACGCTTATGCTTGTTCATATCCGTCCAAATGAGGATG
ttattttacaaactcagttttcttgtagctcatcttggtgtattcgttttaacagGATGTGAGTCCAAAACGCTTATGCTTGTTCATATCCGTCCAAATGAGGATGATTTGTGTGAGAGCATCTGTACCTTGGGTTTTGCGACAAGAGTCAGAAG
ttcgtttt CT-rich tract
ttttaaca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gcatctcactgacagttccataaatgcagaaaaaatgctgctttcttattttacaaactcagttttcttgtagctcatcttggtgtattcgttttaacagGATGTGAGTCCAAAACGCTTATGCTTGTTCATATCCGTCCAAATGAGGATGATTTGTGTGAGAGCATCTGTACCTTGGGTTTTGCGACAAGAGTCAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - -aaatgca
- - - - - - - - - - - - - - - - -aatgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - aaactca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtagct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cttggtg