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gtaggcagtttatttgccagactactcttgcagctaagttcaatacccagcataaatctgtacttgtctactaagttgcaccatgattgattgattactttattaatgaatcgtgtaatgattttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGGCTGGTGATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAG
species | Zea mays |
transcript | GRMZM2G018697_T03 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAG AGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGEST: gi|22490622|gb|BU050545.1|BU050545
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAG AGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGEST: gi|61118430|gb|DN559391.1|DN559391
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: TTATCACCAATTGTGATACTTGCTACGAATAGGGGAATATGTAATGTAAG AGGAACTGATATGACAAGTCCACATGGTATACCAGTGGATCTTCTAAATAGEST: gi|87152471|gb|DY397260.1|DY397260
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAG AGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGEST: gi|61118429|gb|DN559390.1|DN559390
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: TTATCACCAATTGTGATACTTGCTACGAATAGGGGAATATGTAATGTAAG AGGAACTGATATGACAAGTCCACATGGTATACCAGTGGATCTTCTAGATAGEST: gi|31612366|gb|CD568988.1|CD568988
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAG AGGAACTGATATGACAAGTCCACATGGTATACCGGNGGATCTTCTAGATAGEST: gi|213174323|gb|FM191608.1|FM191608
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
EST: TTATCACCAATTGTGATACTTGCTACGAATAGGGGAATATGTAATGTAAG AGGAACTGATATGACAAGTCCACATGGTATACCAGTGGATCTTCTAGATAG
genomic: TTATCACCAATCGTGATACTTGCTACAAATAGGGGAATATGTAATGTAAGgtaggcagtt ... ttttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAG
tgcaccatgattgattgattactttattaatgaatcgtgtaatgattttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGGCTGGTGATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAG
tattaat putative branch site (score: 2)
attgattgattacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcagtttatttgccagactactcttgcagctaagttcaatacccagcataaatctgtacttgtctactaagttgcaccatgattgattgattactttattaatgaatcgtgtaatgattttgtacagAGGAACTGATATGACAAGTCCACATGGTATACCGGTGGATCTTCTAGATAGGCTGGTGATTATTCGGACAGAGACATATGGCCCTACTGAGATGATACAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG