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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatttcattttctggtcttcgtggtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagtagcacattactctataagcttgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcagGTCGGAGAAAGTGATTCCGTAATTATTATAACTCATGAACCAAACTGGCTCCTTGATTGGTATTGGGGTGATAGCACTGGCACAAATGTTGCATATTTGA

Basic information

species Zea mays
transcript GRMZM2G018356_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G018356_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os07g04210.1 (Oryza sativa), 3'ss of exon 10
gtaatttcattttctggtcttcgtggtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagtagcacattactctataagct-tgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcagGTCGGAGAAAGTGATTCCGTAATTATTATAACTCATGAACCAAACTGGCTCCTTGATTGGTATTGGGGTGATAGCACTGGCACAAATGTTGCATATTTGA
                                                                                    ||| | | | | ||||  ||   | |  |    || ||     |  ||  ||   |  | | || | | || || | | |    |  | || |       ||||||||| |||||||||||||| |||||| ||||||||||||| ||||| ||||| ||||||||||| ||||||||||  ||||| ||||| ||||  ||||| |
------------------------------------------------------------------------------------ctagacgttgttatcatgaccagaaaattatgcataatttcacgtgaagtttaccgcgtgtgggttttcttattgactaatactacttgtaac-------tatgcagGTTGGAGAAAGTGATTCTGTAATTCTTATAACTCATGAGCCAAATTGGCTTCTTGATTGGTACTGGGGTGATAAAACTGGAACAAACGTTGAGTATTTAA

upper sequence: GRMZM2G018356_T02 (Zea mays), 3'ss of exon 6
lower sequence: Vv18s0001g11060.t01 (Vitis vinifera), 3'ss of exon 10
gtaatttcattttctggtcttcgtggtatcagcagttgtgtcaagttcattttaaatttggtggtttaatagtagcacattactctataagcttgatcagtactgaagaccttgttatcataagcagaaaacattgaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcagGTCGGAGAAAGTGATTCCGTAATTATTATAACTCATGAACCAAACTGGCTCCTTGATTGGTATTGGGGTGATAGCACTGGCACAAATGTTGCATATTTGA
                                                                              | | ||  || |  ||  || || || |   |  | ||     |  |  |||   |  |    ||  |  |     | |   |  | | |||||||          |  ||||| ||||||| |||||| ||||| ||||| || ||||||||||| ||||| || |||||||| |||  ||||    |||| | ||||||  || |  | |
----------------------------------------------------------------------------ggactcctacatta--ttattctgttcttatttctgtttttcttcattcctaaattttcta--cttacggacttaacatcttcatctcatgatattta----------actcagGTTGGAGAAAATGATTCTGTAATCATTATGACACATGAACCAAATTGGCTTCTGGATTGGTACTGGAATGATGTTTCTGGAAAAAATGTCTCACACCTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211371169|gb|FL041573.1|FL041573
EST:     ACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAG                         GTCAGAGAAAGTGATTCCGTAATTATTATAACTCATGAACCAAATTGGCTC
genomic: ACATTGATGTTTACCAGTTCAAGTTTTTTGCTGAGTTGTGTCAACAGAAGgtaatttcat ... aagtatgcagGTCGGAGAAAGTGATTCCGTAATTATTATAACTCATGAACCAAACTGGCTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaagtctataggatgtgtttttcagtgacttcatatttaccaccaaagtatgcagGTCGGAGAAAGTGATTCCGTAATTATTATAACTCATGAACCAAACTGGCTCCTTGATTGGTATTGGGGTGATAGCACTGGCACAAATGTTGCATATTTGA
                             ttcatattta  TA-rich tract