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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgatctctcttgcagttgcaccttctgaaaaatctcatcgtattcaatgatcacttggttttacttgggttatatgtacagGTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGACAACACTGTCTGTTCAGTGTTTGCTCGTCCTACG

Basic information

species Zea mays
transcript GRMZM2G017089_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G017089_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g21990.1 (Oryza sativa), 3'ss of exon 11
--gtatgatc-tctcttgcagttgcaccttctgaaaaatct--------catcgtattcaatgatcacttggttttacttgggttatatgtacagGTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGACAACACTGTCTGTTCAGTGTTTGCTCGTCCTACG
   ||| |||  |||||  | ||  | ||| || | ||||         ||| ||| | |   |    | ||||||   ||   |  ||  |||||| ||||||||| |||| ||||| ||||||||||||||||| || ||||| ||||| || || |||||||||||||||||||||
gtatataatcacctcttttatttatatcttatgcataatcattagcatacattgtactaaggtaggtttgggtttttgctgaccttcatacacagGTCTGGGACATCCGAACGAAAGCTCATGTTTCTGCTTTAACTGGTCATGATAACACCGTATGCTCAGTGTTTGCTCGTCCTACG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|6021220|gb|AW066148.1|AW066148
EST:     ATCCAACAATTGATATCTTACTGACTGGTGGCCGGGATTCAGTTTGCAGG                         GTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGAC
genomic: ATCCAACAATTGATATCTTACTGACTGGTGGCCGGGATTCAGTTTGCAGGgtatgatctc ... atatgtacagGTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGAC
EST: gi|32933221|gb|CF038033.1|CF038033
EST:     ATCCAACAATTGATATCTTACTGACTGGTGGCCGGGATTCAGTTTGCAGG                         GTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGAC
genomic: ATCCAACAATTGATATCTTACTGACTGGTGGCCGGGATTCAGTTTGCAGGgtatgatctc ... atatgtacagGTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGAC
EST: gi|71416740|gb|DR803804.1|DR803804
EST:     ATCCAACAATTGATATCTTACTGACTGGTGGCCGGGATTCAGTTTGCAGG                         GTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGAC
genomic: ATCCAACAATTGATATCTTACTGACTGGTGGCCGGGATTCAGTTTGCAGGgtatgatctc ... atatgtacagGTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGAC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaaaatctcatcgtattcaatgatcacttggttttacttgggttatatgtacagGTGTGGGACATCAGAACAAAAGCACATGTTTCTGCTTTAACAGGGCATGACAACACTGTCTGTTCAGTGTTTGCTCGTCCTACG
                                           ttatatgta  TA-rich tract