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...tcataacaactggtagattgggtgttcatgtaagtatgtaacaaatatgaaatgatcgccgtgaacttgtgatatttgttgatgaatgctttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATATTCCCTTAAGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGA
species | Zea mays |
transcript | GRMZM2G017086_T04 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|32826398|gb|CD966076.1|CD966076
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: GATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|241994792|gb|GR421145.1|GR421145
genomic: GATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCGCTGTGCANAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGEST: gi|32803651|gb|CD955887.1|CD955887
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAG
EST: GATC-CGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|32932531|gb|CF037343.1|CF037343
genomic: GATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGTAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|211437528|gb|FK975648.1|FK975648
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|32863109|gb|CF002791.1|CF002791
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|32930082|gb|CF034894.1|CF034894
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|32945380|gb|CF050199.1|CF050199
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|32866635|gb|CF006317.1|CF006317
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|32911302|gb|CF016114.1|CF016114
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|32932473|gb|CF037285.1|CF037285
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGTAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|74240015|gb|DT647929.1|DT647929
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGEST: gi|32931528|gb|CF036340.1|CF036340
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAG
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGACCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|67017287|gb|CO446036.1|CO446036
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATAEST: gi|50332356|gb|CO527482.1|CO527482
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATA
EST: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAG GGTCCACTGTGCAGAAA
genomic: TCTGCAGCTCTTCCGATGAAGCAACTATTTGGGATAGATCTCGTGAGCAGgttctgtccc ... ttttttccagGGTCCACTGTGCAGAAA
tatgaaatgatcgccgtgaacttgtgatatttgttgatgaatgctttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATATTCCCTTAAGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGA
tgttgat putative branch site (score: 241)
tgctttttttcc putative PPT
atatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcataacaactggtagattgggtgttcatgtaagtatgtaacaaatatgaaatgatcgccgtgaacttgtgatatttgttgatgaatgctttttttccagGGTCCACTGTGCAGAAAGTGGTGAGGAGAGCATGGAGACAGAATCAGTATATTCCCTTAAGTGTCATATATCTCAAGATGTGAACCATCTTCATGAGGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - aacaact
- - - - - - - - - - - -gttcatg
- - - - - - - - - - - - - - - - - - - taacaaa
- - - - - - - - - - - - - - - - - - - - - - - -tgaaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tttgttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgaatgc