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gttcgtattatttcattttcttgatgttgaccctttgacctattctattgaaaaaatacaactaatttatgtagattaatctgcgatacttctgtatagttgtcgattgtcgtgcatgacactactgtcaattttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTTTATCATTTTATGAAAGACCCTAATCAGAATCAGCAGATTCAGAATTTCG
species | Zea mays |
transcript | GRMZM2G014805_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAG ATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTTEST: gi|60400323|gb|DN233130.1|DN233130
genomic: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAGgttcgtatta ... tttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTT
EST: GAAGATAGAGAAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAG ATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTTEST: gi|76019060|gb|DT946230.1|DT946230
genomic: GAAGATAGAG-AACATAAATGATCAGTACTGGACATTACGAGCTGAGGAGgttcgtatta ... tttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTT
EST: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAG ATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTTEST: gi|13178629|gb|BG349887.1|BG349887
genomic: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAGgttcgtatta ... tttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTT
EST: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAG ATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTTEST: gi|16378289|gb|BI992373.1|BI992373
genomic: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAGgttcgtatta ... tttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTT
EST: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAG ATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCEST: gi|94476779|gb|EB705737.1|EB705737
genomic: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAGgttcgtatta ... tttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACC
EST: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAG ATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTT
genomic: AGAAGATAGAGAACATAAATGATCAGTACTGGACATTACGAGCTGAGGAGgttcgtatta ... tttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTT
acttctgtatagttgtcgattgtcgtgcatgacactactgtcaattttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTTTATCATTTTATGAAAGACCCTAATCAGAATCAGCAGATTCAGAATTTCG
aattttgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgtattatttcattttcttgatgttgaccctttgacctattctattgaaaaaatacaactaatttatgtagattaatctgcgatacttctgtatagttgtcgattgtcgtgcatgacactactgtcaattttgaaacagATTCCAGAGGAAGAGAAGAATCTTGGCCCACATGACCGTTTGATTCATGTTTATCATTTTATGAAAGACCCTAATCAGAATCAGCAGATTCAGAATTTCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT