1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...gtgacgcagtcagttttacgtggccaaagtatgcgcatccactgactaatcataatgaatggcagctacttctacttaatagttcttcccttactttcagTGGACGATTACAAATTCCGAGCAATTGCAAGTTCATTGGACAATCCTAACACCATGAAGCCTCGTCTGTGAGAGATTCATCCATGCCCACAAACTTCCTT
species | Zea mays |
transcript | GRMZM2G014376_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GTTTATACGCCAAGCTATGGGCCAGTTTGAGCATTTCACGGGCATGCCAG TGGACGATTACAAATTCCGAGCAATTGCAAGTTCATTGGACAATCCTAACAEST: gi|113703111|gb|EE680615.1|EE680615
genomic: GTTTATACGCCAAGCTATGGGCCAGTTTGAGCATTTCACGGGCATGCCAGgtactttgat ... ttactttcagTGGACGATTACAAATTCCGAGCAATTGCAAGTTCATTGGACAATCCTAACA
EST: GTTTATACGGCAAGCTATGGGCCAGTTTGAGCATTTCACGGGCATGCCAG TGGATGATTACAAATTCCGAGCAATTGCAAGTTCATTGGACAATCCTAACA
genomic: GTTTATACGCCAAGCTATGGGCCAGTTTGAGCATTTCACGGGCATGCCAGgtactttgat ... ttactttcagTGGACGATTACAAATTCCGAGCAATTGCAAGTTCATTGGACAATCCTAACA
ctaatcataatgaatggcagctacttctacttaatagttcttcccttactttcagTGGACGATTACAAATTCCGAGCAATTGCAAGTTCATTGGACAATCCTAACACCATGAAGCCTCGTCTGTGAGAGATTCATCCATGCCCACAAACTTCCTT
cccttac putative branch site (score: 51)
ttcttcccttactttc CT-rich tract
ataatgaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgacgcagtcagttttacgtggccaaagtatgcgcatccactgactaatcataatgaatggcagctacttctacttaatagttcttcccttactttcagTGGACGATTACAAATTCCGAGCAATTGCAAGTTCATTGGACAATCCTAACACCATGAAGCCTCGTCTGTGAGAGATTCATCCATGCCCACAAACTTCCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - -gcagtca
- - - - - - - - - - - - - -agtatgc
- - - - - - - - - - - - - - - - - gcatcca
- - - - - - - - - - - - - - - - - - - - - - - - - - - atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcagcta