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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgacgcataataatagcagctgcaaaatatttgctatgatccctgagctgcctatcatgatggcgtggcttcacttcactaatcactacgcagGAGATGTACGAGGATGCAAGCCAAGTGGCGACTGATGCTGTCGGCAGTATCAGAACCGTGGCGTCGTTCTGCGCAGAGAAAAGAGTGGTCGCAGCGTACA

Basic information

species Zea mays
transcript GRMZM2G014089_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G014089_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g50100.1 (Oryza sativa), 3'ss of exon 11
gtgacgcataataa-tagcagctgcaaaa--tatttgct------------atgatccc--tgagctgcctatcat--gatggcgtggcttcacttcactaa-tcactacgcagGAGATGTACGAGGATGCAAGCCAAGTGGCGACTGATGCTGTCGGCAGTATCAGAACCGTGGCGTCGTTCTGCGCAGAGAAAAGAGTGGTCGCAGCGTACA
||||| ||| | |  |  || ||| ||||  |  |||||            ||||||      ||    |||  ||   || |  || | | |       |  ||| ||  ||||||||||| |||||||||| |||||| ||| |||| ||||| ||||| |||||||| || || || |||||  |||||||||||||||| |||   ||||
gtgacacattacagcttacaactgtaaaaattgcttgctgttttattgagaatgatctagacaagtgatctagaattaaattgattgccattataatgggatctcattatacagGAGATGTATGAGGATGCAAACCAAGTTGCGGCTGACGCTGTAGGCAGCATCAGAACTGTAGCATCTTTCTGTTCAGAGAAAAGAGTGGTGGCAATATACA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

atccctgagctgcctatcatgatggcgtggcttcacttcactaatcactacgcagGAGATGTACGAGGATGCAAGCCAAGTGGCGACTGATGCTGTCGGCAGTATCAGAACCGTGGCGTCGTTCTGCGCAGAGAAAAGAGTGGTCGCAGCGTACA
                                      cactaat  putative branch site (score: 2)