1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ggaaacgggatgaaacaagtaaacagttccatcattacgaaaattccaaatatataggagaaattatatggtgccctgaatgaaatatgctttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG
species | Zea mays |
transcript | GRMZM2G011893_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|78179760|gb|DV550133.1|DV550133
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|60393994|gb|DN226864.1|DN226864
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|211290372|gb|FL395524.1|FL395524
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|60348982|gb|DN215955.1|DN215955
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|8577165|gb|BE129802.1|BE129802
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|78122303|gb|DV540687.1|DV540687
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTTTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|60352117|gb|DN219090.1|DN219090
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|71428221|gb|DR809271.1|DR809271
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACCCG AATATTGACGTTTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|60350066|gb|DN217039.1|DN217039
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|12047218|gb|BF729357.1|BF729357
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|60357511|gb|DN224484.1|DN224484
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTAEST: gi|211246375|gb|FL451973.1|FL451973
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
EST: GCGGCAGTTGTGGAACTCAGGCAACACG AATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
genomic: GCGGCAGTTGTGGAACTCAGGCAACACGgtaggcgttt ... tttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTA
ccaaatatataggagaaattatatggtgccctgaatgaaatatgctttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG
ctttgttcc CT-rich tract
agaaattatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ggaaacgggatgaaacaagtaaacagttccatcattacgaaaattccaaatatataggagaaattatatggtgccctgaatgaaatatgctttgttccagAATATTGACGTCTTAAACGGGATAGCTTGGGATGAAAGAAGGCACAGATTATTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG