1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
gtgagctcccagtgacattgctgtattagaatgtgttgcagataacccggacacaggttcatgctcatgctgattgctgaccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTCGTGGGAAAATCGTTAAC
species | Zea mays |
transcript | GRMZM2G011078_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTEST: gi|71440938|gb|DR821988.1|DR821988
genomic: GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTT
EST: AAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTCEST: gi|78080153|gb|DV508565.1|DV508565
genomic: GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC
EST: GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTG ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCATTTCTCTTCEST: gi|76280657|gb|DV020225.1|DV020225
genomic: GAACGAGAGCGCTCTCAAGTTCGGATGGTTTTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC
EST: TTTCCTCTTCTACTTG ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTCEST: gi|89760515|gb|DY688892.1|DY688892
genomic: TTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC
EST: TTTTCCTCTTCTACTTG ATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTT
genomic: TTTTCCTCTTCTACTTGgtgagctccc ... ccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTC
ttgcagataacccggacacaggttcatgctcatgctgattgctgaccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTCGTGGGAAAATCGTTAAC
tgctgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagctcccagtgacattgctgtattagaatgtgttgcagataacccggacacaggttcatgctcatgctgattgctgaccccacacagATTCATATCGCCTTCTGCGCGTACGCAGCTGTTTCTCCTTCAATTCTCTTCGTGGGAAAATCGTTAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT