Sequence
atgc intronic sequence ATGC exonic sequencegtgagaaacgcatttcagcggacttgacgacttgtatattattttcctttaaactaaaacttgtttttccccagTTGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTGTCGTTCTTCCCTGGGATCGCTGACGCCATCTCACGGTCCGCCAATCTGAGTGACAAGGAACAGG
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G010353_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g57660.4 (Oryza sativa), 3'ss of exon 5
-----------------------------------------------------------------------------------------------------------------------------gtgagaaacgcatttcagcggacttgacgacttgtatattattttcctttaaactaaaacttgtttttccccagTTGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTGTCGTTCTTCCCTGGGATCGCTGACGCCATCTCACGGTCCGCCAATCTGAGTGACAAGGAACAGG
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gtgagccttaagtgggtcagccatgaacccacttataggtcaaaataagcaggtctgcggcttattttggcctataagtgggtttcgcgggttagccacttacactcttaagcctcccgctattcataagtcataagtcataaccaaatttagaaaaaaaaaatgttgtgcgtgaccacgcttttatatttcttgctagATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGGGTGGCGGACGCCATCTCCCGGTCGAGCAATCGAAGCGCGAAAGAACAGC
upper sequence: GRMZM2G010353_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g57660.3 (Oryza sativa), 3'ss of exon 9
-----------------------------------gtgagaaacgcatttcagcggacttgacgacttgtatattattttcctttaaactaaaacttgtttttccccagTTGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTGTCGTTCTTCCCTGGGATCGCTGACGCCATCTCACGGTCCGCCAATCTGAGTGACAAGGAACAGG
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gttagccacttacactcttaagcctcccgctattcataagtcataagtcataaccaaatttagaaaaaaaaaatgttgtgcgtgaccacgcttttatatttcttgctagATGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTCTCGTTTTTCCCTGGGGTGGCGGACGCCATCTCCCGGTCGAGCAATCGAAGCGCGAAAGAACAGC atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ggacttgacgacttgtatattattttcctttaaactaaaacttgtttttccccagTTGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTGTCGTTCTTCCCTGGGATCGCTGACGCCATCTCACGGTCCGCCAATCTGAGTGACAAGGAACAGG
aactaaa putative branch site (score: 2)
cttgtttttcccc CT-rich tract
tatattattttccttt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtgagaaacgcatttcagcggacttgacgacttgtatattattttcctttaaactaaaacttgtttttccccagTTGTACTCGCCTCCGGAGGACTACGAAAGCAAGCTGTCGTTCTTCCCTGGGATCGCTGACGCCATCTCACGGTCCGCCAATCTGAGTGACAAGGAACAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA