1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtatgtaaatatctggttttaactttatcttcttagttcgttgtgttatttgtagtagtgtgcttcatcattttattttttatttgtgataacattggctactttataaaatgtagGTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTGCCCGGATCCCAGAATTGTAACAGTTTGCTTGGAGGGTCTTGAGAACATC
species | Zea mays |
transcript | GRMZM2G009845_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAA GTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTGEST: gi|71322679|gb|DR798011.1|DR798011
genomic: GCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAAgtatgtaaat ... taaaatgtagGTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTG
EST: GCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAA GTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTGEST: gi|31350199|gb|CD434556.1|CD434556
genomic: GCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAAgtatgtaaat ... taaaatgtagGTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTG
EST: GCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAG GTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCT
genomic: GCCTGGGCAATTTCAAATGCCACTTCTGGTGGCACACATGATCAGATCAAgtatgtaaat ... taaaatgtagGTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCT
gcttcatcattttattttttatttgtgataacattggctactttataaaatgtagGTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTGCCCGGATCCCAGAATTGTAACAGTTTGCTTGGAGGGTCTTGAGAACATC
tgataac putative branch site (score: 128)
atcattttatttttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtaaatatctggttttaactttatcttcttagttcgttgtgttatttgtagtagtgtgcttcatcattttattttttatttgtgataacattggctactttataaaatgtagGTACCTTGTTGCCCAGGGTTGCATTAAGCCACTCTGTGATCTGCTTGTTTGCCCGGATCCCAGAATTGTAACAGTTTGCTTGGAGGGTCTTGAGAACATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG