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...aaccttaggctgcaatctgaacatgcccgaactcttctattgtctacccatccccatgtgccacactggttaatttaaatatttggtaaccaaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACACCTGATAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAG
species | Zea mays |
transcript | GRMZM2G009591_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG GTACCATTCACTCTTGATGGACCGAATGGAGTTCTTCAACATCTCGAACACEST: gi|67014533|gb|CO443282.1|CO443282
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
EST: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG GTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACACEST: gi|160481643|gb|EY254213.1|EY254213
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
EST: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG GTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACACEST: gi|160481647|gb|EY254217.1|EY254217
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
EST: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG GTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACACEST: gi|211370273|gb|FK995942.1|FK995942
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
EST: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAG GTACCATTCACTCTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
genomic: TGCATGCCTCCCTGTCAAGTGGCCAAGTAGATATCTGTCTGATACCTGAGgtatgacgag ... caaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACAC
acccatccccatgtgccacactggttaatttaaatatttggtaaccaaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACACCTGATAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAG
tggtaac putative branch site (score: 2)
ttaatttaaatatttg TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaccttaggctgcaatctgaacatgcccgaactcttctattgtctacccatccccatgtgccacactggttaatttaaatatttggtaaccaaaatgaagGTACCATTCACTGTTGATGGACCGAATGGAGTTCTTCGACATCTCGAACACCTGATAGAGACCAAGGGATTTGCTCTGGTTTGCGTTGCTGAAGGAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG