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gtctgtgtccatttcttttcttctttgttcactttagtggatagttagctatatactgattattatgaaatttgcttatctactgctgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCTAAAAAGGTCAGACGGGAGGTTGCATCCATGGAGAAAGAAGTTGCAGCAA
species | Zea mays |
transcript | GRMZM2G008556_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCTEST: gi|71426784|gb|DR807834.1|DR807834
genomic: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtctgtgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
EST: CATGCCATGAGAAGGATCAGATTTTAAAAGATAAAGAGGATGCTATTGAG ATGTTAGCAAAGAAAGTAGCCACCTTAACTAAAGCAATGGAAGTGGAAGCTEST: gi|113703080|gb|EE680584.1|EE680584
genomic: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtctgtgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
EST: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCTEST: gi|71762835|gb|DR960772.1|DR960772
genomic: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtctgtgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
EST: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCTEST: gi|32838182|gb|CD977860.1|CD977860
genomic: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtctgtgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
EST: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCTEST: gi|5739791|gb|AI947367.1|AI947367
genomic: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtctgtgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
EST: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACNCCTTAACTAAAGCAATGGAAGTGGAAGCTEST: gi|211220743|gb|FL455239.1|FL455239
genomic: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtctgtgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
EST: AGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCTEST: gi|6021554|gb|AW066482.1|AW066482
genomic: AGATGATGCTATTGAGgtctgtgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
EST: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCTEST: gi|32837805|gb|CD977483.1|CD977483
genomic: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtctgtgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
EST: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATNATNCTATTGAG ATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
genomic: CATGCCATGAGAAGGATCAGATTCTAAAAGATAAAGATGATGCTATTGAGgtctgtgtcc ... tgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCT
tagttagctatatactgattattatgaaatttgcttatctactgctgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCTAAAAAGGTCAGACGGGAGGTTGCATCCATGGAGAAAGAAGTTGCAGCAA
tactgat putative branch site (score: 269)
tatatactgattatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgtgtccatttcttttcttctttgttcactttagtggatagttagctatatactgattattatgaaatttgcttatctactgctgtctggcagATGTTAGCAAAGAAAGTAGACACCTTAACTAAAGCAATGGAAGTGGAAGCTAAAAAGGTCAGACGGGAGGTTGCATCCATGGAGAAAGAAGTTGCAGCAA
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