1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaagctgcatgtaacttctatcgaaatcatttgtggttgcaaatttattatgctaacaaaaaacatgcgatcttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTAAGGTTTCTGTAAACACTGCTGCTCGGAGGGAAATTCTAGATATTGCTG
species | Zea mays |
transcript | GRMZM2G007647_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAA GTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTEST: gi|60356357|gb|DN223330.1|DN223330
genomic: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAAgtaagctgca ... cttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
EST: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAA GTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTEST: gi|44900488|gb|CK827033.1|CK827033
genomic: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAAgtaagctgca ... cttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
EST: TGATGTGCATGAA GTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTEST: gi|4827621|gb|AI668313.1|AI668313
genomic: TGATGTGCATGAAgtaagctgca ... cttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
EST: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAA GTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTEST: gi|89247463|gb|DY619249.1|DY619249
genomic: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAAgtaagctgca ... cttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
EST: CCATTGGGAAGTTAGTTCAGCAGCTTTACNAGCTTATTGATGTGCATGAA GTTCATGACATTACCCACTCACCCTTTGCTGAAAGGGAGCTGATGCTTATTEST: gi|211044763|gb|FL481858.1|FL481858
genomic: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAAgtaagctgca ... cttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
EST: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAA GTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTEST: gi|67022242|gb|CO450991.1|CO450991
genomic: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAAgtaagctgca ... cttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
EST: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAA GTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTEST: gi|67017113|gb|CO445862.1|CO445862
genomic: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAAgtaagctgca ... cttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
EST: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAA GTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTEST: gi|89247462|gb|DY619248.1|DY619248
genomic: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAAgtaagctgca ... cttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
EST: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAA GTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
genomic: CCATTGGGAAGTTAGTTCAGCAGCTTTACAAGCTTATTGATGTGCATGAAgtaagctgca ... cttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATT
tcatttgtggttgcaaatttattatgctaacaaaaaacatgcgatcttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTAAGGTTTCTGTAAACACTGCTGCTCGGAGGGAAATTCTAGATATTGCTG
tgctaac putative branch site (score: 101)
tcttccctc putative PPT
aaatttattatgctaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagctgcatgtaacttctatcgaaatcatttgtggttgcaaatttattatgctaacaaaaaacatgcgatcttccctcagGTTCATGACATTACCCACTCACCTTTTGCTGAAAGGGAGCTGATGCTTATTAAGGTTTCTGTAAACACTGCTGCTCGGAGGGAAATTCTAGATATTGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT