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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctgatatcattggcgttttacttttattaccatttgggcatttgaagcaaagctctgtagagaagaagtcagggaaatgttttccttctccttttcgcagGCTGACGGATTTAATGCAGTGGCAAGGGTTGGGGTGGCTGCTGACCACCGGGGAATCGTGTGCAGTCGCCGCGTGTTCCGGATCGTTCAGCACTGGCTGC

Basic information

species Zea mays
transcript GRMZM2G007157_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G007157_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os04g52500.1 (Oryza sativa), 3'ss of exon 10
gtctgatatcattggcgttttacttttat-taccatttgggcatttgaagcaaagctctgtagagaag----aagtcagggaaatgttttccttctcct-tttcgcagGCTGACGGATTTAATGCAGTGGCAAGGGTTGGGGTGGCTGCTGACCACCGGGGAATCGTGTGCAGTCGCCGCGTGTTCCGGATCGTTCAGCACTGGCTGC
|| |||||| ||| | |||||  ||  |  |  | ||     |    ||   ||  || | ||| |||     | | ||  || ||    || ||  |   || |||||| || ||  |  ||||||||||||| |||||||| ||||| |||||||| |||||||| ||   ||| | ||||||||||||  ||||||||||||| |
gtatgatattattagtgttttggttgaaaatttctttcaaaaagaaaaaatgaa--tcaggagaaaagtttacattgagaaaattgagaaccatcaacgactttgcagGCAGATGGCCTCGATGCAGTGGCAAGAGTTGGGGTTGCTGCAGACCACCGAGGAATCGTCTGTGATCGTCACGTGTTCCGGATAATTCAGCACTGGCTCC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71760945|gb|DR958882.1|DR958882
EST:     AATACGTCTATGTTGATGGCGACGGATCTGTTCCCGCAGAATCAGCAAAG                         GCTGACGGATTTAATGCAGTGGCAAGGGTTGGGGTGGCTGCTGACCACCGG
genomic: AATACGTCTATGTTGATGGCGACGGATCTGTTCCCGCAGAATCAGCAAAGgtctgatatc ... cttttcgcagGCTGACGGATTTAATGCAGTGGCAAGGGTTGGGGTGGCTGCTGACCACCGG
EST: gi|78079669|gb|DV508081.1|DV508081
EST:     AATACGTCTATGTTGATGGCGACGGATCTGTTCCCGCAGAATCAGCAAAG                         GCTGACGGATTTAATGCAGTGGCAAGGGTTGGGGTGGCTGCTGACCACCGG
genomic: AATACGTCTATGTTGATGGCGACGGATCTGTTCCCGCAGAATCAGCAAAGgtctgatatc ... cttttcgcagGCTGACGGATTTAATGCAGTGGCAAGGGTTGGGGTGGCTGCTGACCACCGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agcaaagctctgtagagaagaagtcagggaaatgttttccttctccttttcgcagGCTGACGGATTTAATGCAGTGGCAAGGGTTGGGGTGGCTGCTGACCACCGGGGAATCGTGTGCAGTCGCCGCGTGTTCCGGATCGTTCAGCACTGGCTGC
                                tgttttccttctcctt  CT-rich tract
                             aaatgtttt  TA-rich tract