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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttctactgcgtcacttgtagtattttgcttctgtcactctactcgagtatatcttgtgggtaactggtgtgtcccgattgctgcatcatgctttgagactcttgcctgcagGTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGAAAGTTGTCCTTGCTCAGGAGGTGGTCAAGGGACTACATGCAGTCTCTGA

Basic information

species Zea mays
transcript GRMZM2G006781_T03
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G006781_T03 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os12g35290.1 (Oryza sativa), 3'ss of exon 10
--------------------------------------------gtaagttctac---tgcgtcacttgtagtattttgcttctgtcac-tctactcgagtatatcttgtgg-gtaactggtgtgtcccgattgctgcatcatgctttgagactcttgcctgcagGTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGAAAGTTGTCCTTGCTCAGGAGGTGGTCAAGGGACTACATGCAGTCTCTGA
                                            |  | ||||||   |   | |  | | | ||||     |  |||  |  | || | |   || ||||  || |  | ||| |     ||| |   ||||   ||   ||| |    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  ||| |||||  |||||||||| |||||| |||| || || |||||
gtaagttttgttgatctctctctccctctcattcccctgcacatggtaattctacacttaaatgaaatattgaatttatacaccatcatgttgaatctaatg-gtcatgtgttgtgatggctgtataaaagttgatatgtcatttgttttaactttc-tgtgcagGTGTTTCAGCGGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGAAAAATGTACTTGCCGAGGAGGTGGTGAAGGGATTACAAGCCGTTTCTGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|76018822|gb|DT945992.1|DT945992
EST:     AGTGTTTGTCAACG                         GTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
genomic: AGTGTTTGTCAACGgtaagttcta ... ttgcctgcagGTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
EST: gi|32837856|gb|CD977534.1|CD977534
EST:     TCCACCTTCCGTTTTAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACG                         GTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
genomic: TCCACCTTCCGTTTTAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACGgtaagttcta ... ttgcctgcagGTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
EST: gi|32839358|gb|CD979039.1|CD979039
EST:     TCCACCTTCCGTTTTAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACG                         GTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
genomic: TCCACCTTCCGTTTTAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACGgtaagttcta ... ttgcctgcagGTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
EST: gi|32836515|gb|CD976193.1|CD976193
EST:     TCCACCTTCCGTTTTAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACG                         GTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
genomic: TCCACCTTCCGTTTTAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACGgtaagttcta ... ttgcctgcagGTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
EST: gi|32794424|gb|CD946660.1|CD946660
EST:     TAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACG                         GTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
genomic: TAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACGgtaagttcta ... ttgcctgcagGTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
EST: gi|32827025|gb|CD966703.1|CD966703
EST:     TAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACG                         GTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA
genomic: TAATGGAGCATCCACCTCTTGCAGTGTTTGTCAACGgtaagttcta ... ttgcctgcagGTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgggtaactggtgtgtcccgattgctgcatcatgctttgagactcttgcctgcagGTGTTTCAGCAGCAATGAATGAGCTAAGACCGTGCGCACCATTGAGCTTGAAAGTTGTCCTTGCTCAGGAGGTGGTCAAGGGACTACATGCAGTCTCTGA
 gggtaac  putative branch site (score: 3)
                                          ctcttgcct  putative PPT