1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtacgtaaaccttgcactgctgtacctcaggattttcccttttggtggcgttctttctgcctgacctctagtgtgtgtgtttttccccctcaccagAGAGTTGTTAACAAGTGGTGCATGGCATTTCTCATTCTCTTCGAGGAAGGCCTGCGAAACCTGCGAGACGCGCAGATAGTGTCGCAAGGCACGCTGGAAA
species | Zea mays |
transcript | GRMZM2G006069_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CCGATGACTGCTTCAAAATGTTCAATCCTGTTGACAAGAAAACATTCGAC AGAGTTGTTAACAAGTGGTGCATGGCATTTCTCATTCTCTTCGAGGAAGGCEST: gi|7162226|gb|AW519833.1|AW519833
genomic: CCGATGACTGCTTCAAAATGTTCAATCCTGTTGACAAGAAAACATTCGACgtacgtaaac ... ccctcaccagAGAGTTGTTAACAAGTGGTGCATGGCATTTCTCATTCTCTTCGAGGAAGGC
EST: CCGATGACTGCTTCAAAATGTTCAATCCTGTTGACAAGAAAACATTCGAC AGAGTCGTTAACAAGTGGTGCATGGCATTTCTCATTCTCTTCGAGGAAGGC
genomic: CCGATGACTGCTTCAAAATGTTCAATCCTGTTGACAAGAAAACATTCGACgtacgtaaac ... ccctcaccagAGAGTTGTTAACAAGTGGTGCATGGCATTTCTCATTCTCTTCGAGGAAGGC
ttggtggcgttctttctgcctgacctctagtgtgtgtgtttttccccctcaccagAGAGTTGTTAACAAGTGGTGCATGGCATTTCTCATTCTCTTCGAGGAAGGCCTGCGAAACCTGCGAGACGCGCAGATAGTGTCGCAAGGCACGCTGGAAA
gcctgac putative branch site (score: 3)
tgtttttccccctcac putative PPT
tgttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacgtaaaccttgcactgctgtacctcaggattttcccttttggtggcgttctttctgcctgacctctagtgtgtgtgtttttccccctcaccagAGAGTTGTTAACAAGTGGTGCATGGCATTTCTCATTCTCTTCGAGGAAGGCCTGCGAAACCTGCGAGACGCGCAGATAGTGTCGCAAGGCACGCTGGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA