1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
gtcagttaatctattgtcgataactccctgtctggacaacagcacagagctgacgttgctgttattcagATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAATCCTGTTGACAAGAAAACATTCGAC
species | Zea mays |
transcript | GRMZM2G006069_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CTGATTACATGTATGACATTGCAGAGGTGCCAATGCCGTTCACCTTTGAG ATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAATEST: gi|32792875|gb|CD945111.1|CD945111
genomic: CTGATTACATGTATGACATTGCAAAGGTGCCAATGCCGTTCACCTTTGAGgtcagttaat ... tgttattcagATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAAT
EST: CTGATTACATGTATGACATTGCAAAGGTGCCAATGCCGTTCACCTTTGAG ATATGTGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAATEST: gi|31361623|gb|CD445980.1|CD445980
genomic: CTGATTACATGTATGACATTGCAAAGGTGCCAATGCCGTTCACCTTTGAGgtcagttaat ... tgttattcagATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAAT
EST: CTGATTACATGTATGACATTGCAAAGGTGCCAATGCCGTTCACCTTTGAG ATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAATEST: gi|7162226|gb|AW519833.1|AW519833
genomic: CTGATTACATGTATGACATTGCAAAGGTGCCAATGCCGTTCACCTTTGAGgtcagttaat ... tgttattcagATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAAT
EST: CTGATTACATGTATGACATTGCAAAGGTGCCAATTCCGTTCACCTTTGAG ATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAAT
genomic: CTGATTACATGTATGACATTGCAAAGGTGCCAATGCCGTTCACCTTTGAGgtcagttaat ... tgttattcagATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAAT
tgtcgataactccctgtctggacaacagcacagagctgacgttgctgttattcagATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAATCCTGTTGACAAGAAAACATTCGAC
agctgac putative branch site (score: 14)
tgttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcagttaatctattgtcgataactccctgtctggacaacagcacagagctgacgttgctgttattcagATATATGGAGATGAGAAAGCATCTTCCGATGACTGCTTCAAAATGTTCAATCCTGTTGACAAGAAAACATTCGAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA