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...tcaaagcgggccgttcgtctctagtaatctaaattgtgtacgcccttgtgttcaaacaattaatgcagctgactgtttttttaatgttatcattcaacagAGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAG
species | Zea mays |
transcript | GRMZM2G005036_T02 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACT AGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTGEST: gi|89758987|gb|DY687957.1|DY687957
genomic: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACTgtaagcttct ... cattcaacagAGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTG
EST: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACT AGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTGEST: gi|71438038|gb|DR819088.1|DR819088
genomic: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACTgtaagcttct ... cattcaacagAGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTG
EST: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACT AGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTGEST: gi|32863948|gb|CF003630.1|CF003630
genomic: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACTgtaagcttct ... cattcaacagAGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTG
EST: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATCTATGCAGTCACT AGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTGEST: gi|40336960|gb|CK371030.1|CK371030
genomic: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACTgtaagcttct ... cattcaacagAGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTG
EST: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACT AGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTGEST: gi|211246196|gb|FL443898.1|FL443898
genomic: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACTgtaagcttct ... cattcaacagAGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTG
EST: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACT AGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTG
genomic: TCAATAGCGTCTATAACAATTCGGGCCTTTTTGGAATTTATGCAGTCACTgtaagcttct ... cattcaacagAGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTG
ttgtgttcaaacaattaatgcagctgactgtttttttaatgttatcattcaacagAGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAG
ttttaat putative branch site (score: 3)
tttttttaatgttatc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaaagcgggccgttcgtctctagtaatctaaattgtgtacgcccttgtgttcaaacaattaatgcagctgactgtttttttaatgttatcattcaacagAGCCCAGACTTTTCATCGAAGGCTGTGGATTTGGCAGCAGGGGAACTCCTGGAGATTGCGACACCTGGAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT