1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...agttcacatagcacatttctattctcgattcagagcaaagaaccttctttttttgtttgcttcagccatcttgactttaccagcttatctactattgtagGGTTCATTGCGATGTATGCTACTCTTGCTAGTCGAGATGTG
species | Zea mays |
transcript | GRMZM2G004932_T01 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CAGTGCTGAGAATGGAATAGGTTTAGTAAAACTGATGGGCCGTTATAGTG GGTTCATTGCGATGTATGCTACTCTTGCTAGTCGAGATGTGEST: gi|211119332|gb|FL065967.1|FL065967
genomic: CAGTGCTGAGAATGGAATAGGTTTAGTAAAACTGATGGGCCGTTATAGTGgttagtattc ... actattgtagGGTTCATTGCGATGTATGCTACTCTTGCTAGTCGAGATGTG
EST: CAGTGCTGAGAATGGAATAGGTTTAGTAAAACTGATGGGCCGTTATAGTG GGTTCATTGCGAT-TATGCTACTCTTGCTAGTCGAGATGTGEST: gi|94479652|gb|EB708610.1|EB708610
genomic: CAGTGCTGAGAATGGAATAGGTTTAGTAAAACTGATGGGCCGTTATAGTGgttagtattc ... actattgtagGGTTCATTGCGATGTATGCTACTCTTGCTAGTCGAGATGTG
EST: CAGTGCTGAGAATGGAATAGGTTTAGTAAAACTGATGGGCCGTTATAGTG GGTTCATTGCGATGTATGCTACTCTTGCTAGTCGAGATGTG
genomic: CAGTGCTGAGAATGGAATAGGTTTAGTAAAACTGATGGGCCGTTATAGTGgttagtattc ... actattgtagGGTTCATTGCGATGTATGCTACTCTTGCTAGTCGAGATGTG
tctttttttgtttgcttcagccatcttgactttaccagcttatctactattgtagGGTTCATTGCGATGTATGCTACTCTTGCTAGTCGAGATGTG
tcttgac putative branch site (score: 80)
ttttgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agttcacatagcacatttctattctcgattcagagcaaagaaccttctttttttgtttgcttcagccatcttgactttaccagcttatctactattgtagGGTTCATTGCGATGTATGCTACTCTTGCTAGTCGAGATGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - gcacatt
- - - - - - - - - - - - - - - - gagcaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -taccagc