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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtgcaatgccatttgacgccatgtctttggttatctcctagtaaaaccaaacacatgttgattgcttggatgttaatgcctctaaaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGGAACGACATTCAAATCCCTGGGCTCGCCAATGTAGCCGCAACTGTGATGA

Basic information

species Zea mays
transcript GRMZM2G003385_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003385_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os01g60190.1 (Oryza sativa), 3'ss of exon 9
--------------------------------------gtgagtgcaatgccatttgacgccatgtctttggttatctcctagtaaaaccaaacaca---------------tgttgattgcttggatgtt-aatgcctcta--aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGGAACGACATTCAAATCCCTGGGCTCGCCAATGTAGCCGCAACTGTGATGA
                                      ||| ||    ||     || ||      |||   |  || ||  |||| |||||  | |               ||||| |   |||  | || ||||||| ||  |||||||||||| |||||||| |||||||| || ||||||||||| || ||||||||||||   |||||||| | |||||||||||||||||| || ||||| || ||||
gtacgtgcaaatgttcatataatgctatgttttatgttgtgtgtttgttgattactg-cgatgcaccttacatattcgccctgtaataccaagtagagtgctttttttttgttgttgttgatttgagtttttaatgcctatataaaacttgcagGTCCCGGTTGCTATTGGAGGTCCCGGTCTTCACCCTGGTGTGAAATTCCGGTCTGACATTCAGACCCCTGGGCTCGCCAATGTTGCTGCAACCGTAATGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31352760|gb|CD437117.1|CD437117
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|6012563|gb|AW062000.1|AW062000
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|24765765|gb|CA400924.1|CA400924
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|67024990|gb|CO453739.1|CO453739
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTC-CCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|67018390|gb|CO447139.1|CO447139
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31362420|gb|CD446777.1|CD446777
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|18170490|gb|BM340330.1|BM340330
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|61119246|gb|DN560207.1|DN560207
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|67015206|gb|CO443955.1|CO443955
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|24770211|gb|CA405340.1|CA405340
EST:     TCGACAAGAATGGTGGTATCCAGATTTTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|60394238|gb|DN227108.1|DN227108
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|113702480|gb|EE679984.1|EE679984
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|16926066|gb|BM079134.1|BM079134
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|6021846|gb|AW066774.1|AW066774
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|67023294|gb|CO452043.1|CO452043
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31351607|gb|CD435964.1|CD435964
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31664103|gb|CD573283.1|CD573283
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|67014111|gb|CO442860.1|CO442860
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|84980541|gb|DW530890.1|DW530890
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|24769554|gb|CA404683.1|CA404683
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|60358060|gb|DN225033.1|DN225033
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|33091808|gb|CF051802.1|CF051802
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31359610|gb|CD443967.1|CD443967
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|37396131|gb|CF635353.1|CF635353
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|78085787|gb|DV514180.1|DV514180
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|32866107|gb|CF005789.1|CF005789
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTT-ATTC-                         TTTCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|211242237|gb|FL127857.1|FL127857
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31361690|gb|CD446047.1|CD446047
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|120481376|gb|EH211274.1|EH211274
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|9953590|gb|BE640173.1|BE640173
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTC
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTC
EST: gi|6827652|gb|AW331295.1|AW331295
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|6538911|gb|AW225050.1|AW225050
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31352759|gb|CD437116.1|CD437116
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|60356435|gb|DN223408.1|DN223408
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|14244650|gb|BG842588.2|BG842588
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|37395541|gb|CF635051.1|CF635051
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|211242234|gb|FL127854.1|FL127854
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|21810017|gb|BQ668335.1|BQ668335
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31354846|gb|CD439203.1|CD439203
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|33101922|gb|CF061882.1|CF061882
EST:     TAGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|14208222|gb|BG841900.1|BG841900
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|4647544|gb|AI622619.1|AI622619
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|62550458|gb|DN830878.1|DN830878
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAGCCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTCCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|44900321|gb|CK826866.1|CK826866
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|30088165|gb|CB886370.1|CB886370
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|6654085|gb|AW267490.1|AW267490
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31363155|gb|CD447512.1|CD447512
EST:     TCGACAAGAATGGTGGTATCCAGATTTTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCCCCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|40336839|gb|CK370909.1|CK370909
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|60394802|gb|DN227672.1|DN227672
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31362729|gb|CD447086.1|CD447086
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|24767470|gb|CA402612.1|CA402612
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|211240012|gb|FL127852.1|FL127852
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCANTGGAGGCC-TGGTCTTCACCCCGGAGTGAAACTCCGG
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|67014386|gb|CO443135.1|CO443135
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG
EST: gi|31355731|gb|CD440088.1|CD440088
EST:     TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCG                         GTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGT
genomic: TCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 662

TGGCAATGCTGAGGATATGGTGAAAAGGAACAAATCTGGCAAGCCGTTGCTCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGGAACGACATTCAAATCCCTGGGCTCGCCAATGTAGCCGCAACTGTGATGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1016

TGGCAATGCTGAGGATATGGTGAAAAGGAACAAATCTGGCAAGCCGTTGCTCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGGAACGACATTCAAATCCCTGGGCTCGCCAATGTAGCCGCAACTGTGATGA


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 488

TGGCAATGCTGAGGATATGGTGAAAAGGAACAAATCTGGCAAGCCGTTGCTCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGGAACGACATTCAAATCCCTGGGCTCGCCAATGTAGCCGCAACTGTGATGA


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 1188

TGGCAATGCTGAGGATATGGTGAAAAGGAACAAATCTGGCAAGCCGTTGCTCGACAAGAATGGTGGTATCCAGATTCTAACCTCGCATACCCTTCAGCCGgtgagtgcaa ... aaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGGAACGACATTCAAATCCCTGGGCTCGCCAATGTAGCCGCAACTGTGATGA




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

agtaaaaccaaacacatgttgattgcttggatgttaatgcctctaaaacttgcagGTGCCGGTTGCCATTGGAGGCCCTGGTCTTCACCCCGGAGTGAAATTCCGGAACGACATTCAAATCCCTGGGCTCGCCAATGTAGCCGCAACTGTGATGA
                                        ctctaaa  putative branch site (score: 1188)
                              atgttaat  TA-rich tract