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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcaattgcaatttctttggactggtctatagtattaccagttcatgttggtaggtgtgtcaaaggaatccactaacttagcatgtatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG

Basic information

species Zea mays
transcript GRMZM2G003076_T02
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G003076_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os10g39220.1 (Oryza sativa), 3'ss of exon 9
gtaagcaattgcaatttctttggactggtctatagtattaccagttcatgttggtaggtgtgtcaaaggaatccactaacttagcatgtatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG
|||||    |  |||||||||||| |  |  | || |||   || |         |||      | || |||  ||||| ||      | | |||||| |||| |||||  |||||||||||| ||| || |||||||| ||||||||||| || ||||| ||| | |||||| ||
gtaagtgtgtagaatttctttggagtctttgaaagaatt--tagcttgctgaaacagg------agagaaat--actaagttgagccttgtcttgcagATGTGTCTCAACACATTTGATAAAGCAGCTGACCTTGATGTTCTGAACCATCCGATTCTGAATTTCTTTTATTACTTG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18166177|gb|BM336016.1|BM336016
EST:     TGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATG                         CTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
genomic: TGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATGgtaagcaatt ... tatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
EST: gi|16920930|gb|BM074899.1|BM074899
EST:     TGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATG                         CTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
genomic: TGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATGgtaagcaatt ... tatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
EST: gi|18170671|gb|BM340511.1|BM340511
EST:     GCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATG                         CTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
genomic: GCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATGgtaagcaatt ... tatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
EST: gi|71429006|gb|DR810056.1|DR810056
EST:     GCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATG                         CTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
genomic: GCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATGgtaagcaatt ... tatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
EST: gi|71429005|gb|DR810055.1|DR810055
EST:     GCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATG                         CTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
genomic: GCTATGTGACTACCATCTGTTTTTCTTGTTTCTTGATCAGATGTGTCATGgtaagcaatt ... tatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
EST: gi|18163841|gb|BM333680.1|BM333680
EST:     CAGATGTGTCATG                         CTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
genomic: CAGATGTGTCATGgtaagcaatt ... tatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
EST: gi|71319323|gb|DR796414.1|DR796414
EST:     CTTGATCAGATGTGTCATG                         CTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT
genomic: CTTGATCAGATGTGTCATGgtaagcaatt ... tatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCAT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttcatgttggtaggtgtgtcaaaggaatccactaacttagcatgtatattgcagCTGTGCCTCAATTCATTTGATAAAGAAGCAGATCTTGATGTCCTGAACCATCCAATCCTGAACTTCCTCTATTACCTG
                              cactaac  putative branch site (score: 1)
                                          atgtatatt  TA-rich tract