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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gtaaagtcatattaagactttttattgtatttagtttgttatattgaaatattgcatatataatgagcatctcatatatcctcttcttcccacaatttagGCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG

Basic information

species Zea mays
transcript GRMZM2G000749_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000749_T01 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os03g06190.1 (Oryza sativa), 3'ss of exon 9
gtaaagtcatattaagactttttattgtatttagtttgttatattgaaatattgcatatataat--gagcatctcatatatcctcttcttcccacaatttagGCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG
  |    |||   | |  |    ||   |  |  | | || | |   |||   |  ||| ||||    |  | | ||| ||      | |  |    |  ||||||||||| | |||||||||  |||||||||| | | ||||||||| ||||||||| |  | |||||||||||||||||||||||||
--atgtccatgccatgtttccaaataacaacttatattttttctaccaattcgggttatttaatttatgtgtgtaataaatatctcacatatctttttgcagGCTCTACATCAATGGAGAGATTATATAGCTCGTGAAGTAGATGAGAGCACTGGTTATGTGTTACCAAATAAGGCTTTAATTGAGATAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|21987416|gb|BQ778944.1|BQ778944
EST:     GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCT                         GCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT
genomic: GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCTgtaagaacag ... cacaatttagGCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT
EST: gi|211021453|gb|FL457596.1|FL457596
EST:     GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCT                         GCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT
genomic: GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCTgtaagaacag ... cacaatttagGCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT
EST: gi|60341236|gb|DN208209.1|DN208209
EST:     GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCT                         GCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT
genomic: GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCTgtaagaacag ... cacaatttagGCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT
EST: gi|88756696|gb|DY540837.1|DY540837
EST:     GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCT                         GCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT
genomic: GTTGCAGGAACATGAACTGGATGCAAGACAGCTGGCTGTTGTTGCTgtaagaacag ... cacaatttagGCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT
EST: gi|22543109|gb|BU093547.1|BU093547
EST:     GACAGCTGGCTGTTGTTGCT                         GCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT
genomic: GACAGCTGGCTGTTGTTGCTgtaagaacag ... cacaatttagGCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaaatattgcatatataatgagcatctcatatatcctcttcttcccacaatttagGCTCTACATGAGTGGAGAGATCGTATAGCTCGTCAGGAAGATGAGAGTACTGGTTATATACTGCCAAATAAGGCTTTAATTGAGATAG
                        tctcatatatcctctt  CT-rich tract
     attgcatatataat  TA-rich tract