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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ggggtggactcatgtgacaaaagtttctagtttttcattcaagatactctgtaatgccttttcattttcaatgactgattcacgttattcataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGCTCGCTACATCAACATAAATAG

Basic information

species Zea mays
transcript GRMZM2G000393_T01
intron # 9
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G000393_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os06g07905.2 (Oryza sativa), 3'ss of exon 9
ggggtggactc----atgtgacaaaagtttctagtttttcattcaagatactctgtaatgccttttcattttcaatgactgattcacgttattcataaaaa-cagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGCTCGCTACATCAACATAAATAG
|  |||  |||     | |    |  ||||  | | | |   ||     ||| | || |   |     ||||      | | |    || |||  |||    |||||||||||| || ||||| ||| |||||||||||||||| || |||||||| |||||||| |||||||| ||
gaagtgttctctgctgtttcttcagcgttttcattctctggctccttcaactttctagtatatcacttttttt-----ccgttcactgtgatttttaattctcagGTATTTTCGCCATGCTTCCGGTGCTTTGTTTATCCTCTCTAACAATTTGGCACGCTACATTAACATAAACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32928477|gb|CF033289.1|CF033289
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|71435122|gb|DR816172.1|DR816172
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|60338589|gb|DN205562.1|DN205562
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|71436236|gb|DR817286.1|DR817286
EST:     GGCCACCAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|50323552|gb|CO518678.1|CO518678
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|4775973|gb|AI664976.1|AI664976
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|78021331|gb|DV489718.1|DV489718
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|32846895|gb|CD986576.1|CD986576
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAACTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTTTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|33091019|gb|CF051013.1|CF051013
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTC-ACCTC                         G
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacag-
EST: gi|33091019|gb|CF051013.1|CF051013
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTC-ACCTC                         G
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacag-
EST: gi|60346760|gb|DN213733.1|DN213733
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|71426993|gb|DR808043.1|DR808043
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|32929367|gb|CF034179.1|CF034179
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGGTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|61119808|gb|DN560769.1|DN560769
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|60344825|gb|DN211798.1|DN211798
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|149005473|gb|EE040028.2|EE040028
EST:     GGCCACCAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTTTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|71772159|gb|DR970096.1|DR970096
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|149096404|gb|EE182138.2|EE182138
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|110200892|gb|EC882789.1|EC882789
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|24765385|gb|CA400544.1|CA400544
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|21828587|gb|BQ703271.1|BQ703271
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|78093004|gb|DV521378.1|DV521378
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|211130920|gb|FL136658.1|FL136658
EST:     GCCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: G-CCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|60346466|gb|DN213439.1|DN213439
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|148940752|gb|EC885572.2|EC885572
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|15082759|gb|BI389443.1|BI389443
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|113703856|gb|EE681360.1|EE681360
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
EST: gi|5124017|gb|AI745858.1|AI745858
EST:     GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAAC                         GTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC
genomic: GGCCAACAATGGTATGAACCTGAGTGGTGGAAATTTGGAGATTCAAAAACgtgagttaat ... ataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

actctgtaatgccttttcattttcaatgactgattcacgttattcataaaaacagGTATTTTCGACACGCTTCTGGTTCTTTGTTTATCCTCTCAAAAAATTTGGCTCGCTACATCAACATAAATAG
                           gactgat  putative branch site (score: 3)
                                       ttattcataaaaaca  TA-rich tract