1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
gtgatttcttgcttccatctccaatccttggaagcctccatactttgtgtagaatttaacttttatttggtaaaatgtcagGTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAGAAAACCCAGCGAATTTCAAG
species | Zea mays |
transcript | AC234528.1_FGT005 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: GGAAGGTTCTGTCGCAAAAATAACTGGCAAAGAGGGACTGTTCTTCTCAG GTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAGEST: gi|89250573|gb|DY622359.1|DY622359
genomic: GGAAGGTTCTGTCGCAAAAATAACTGGCAAAGAGGGACTGTTCTTCTCAGgtgatttctt ... aaaatgtcagGTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAG
EST: GGAAGGTTCTGTCGCAAAAATAACTGGCAAAGAGGGACTGTTCTTCTCAG GTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAGEST: gi|31363513|gb|CD447870.1|CD447870
genomic: GGAAGGTTCTGTCGCAAAAATAACTGGCAAAGAGGGACTGTTCTTCTCAGgtgatttctt ... aaaatgtcagGTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAG
EST: GGAAGGTTCTGTCGCAAAAATAACTGGCAAAGAGGGACTGTTCTTCTCAG GTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAGEST: gi|31358397|gb|CD442754.1|CD442754
genomic: GGAAGGTTCTGTCGCAAAAATAACTGGCAAAGAGGGACTGTTCTTCTCAGgtgatttctt ... aaaatgtcagGTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAG
EST: GGAAGGTTCTGTCGCAAAAATAACTGGCAAAGAGGGACTGTTCTTCTCAG GTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAG
genomic: GGAAGGTTCTGTCGCAAAAATAACTGGCAAAGAGGGACTGTTCTTCTCAGgtgatttctt ... aaaatgtcagGTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAG
cttggaagcctccatactttgtgtagaatttaacttttatttggtaaaatgtcagGTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAGAAAACCCAGCGAATTTCAAG
atttaac putative branch site (score: 45)
tagaatttaactttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgatttcttgcttccatctccaatccttggaagcctccatactttgtgtagaatttaacttttatttggtaaaatgtcagGTCCCGCATTAGTTTTTGAGGGTGAAGAATCCATGATCACAGCTATCTCAGAAAACCCAGCGAATTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA