1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...aattgtattccatatgcttcactgtgtcacaatcacaactcaacaactttgattcccttcattttcctgcgacatcctgatttctggtataaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATCAATTAACTGCCACGCCAGCTGCAAGATCCTTGTTGACAGAACTGAAGG
species | Zea mays |
transcript | AC209858.4_FGT002 |
intron # | 9 |
splice site | 3' |
intron type | U2 |
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|32937153|gb|CF041972.1|CF041972
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|32932056|gb|CF036868.1|CF036868
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|32835694|gb|CD975372.1|CD975372
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|32835920|gb|CD975598.1|CD975598
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|32832909|gb|CD972587.1|CD972587
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CGCTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|211417128|gb|FL448753.1|FL448753
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|78084366|gb|DV512759.1|DV512759
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|211057077|gb|FL049064.1|FL049064
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGRTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|32833351|gb|CD973029.1|CD973029
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATEST: gi|78084367|gb|DV512760.1|DV512760
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
EST: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAG GTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
genomic: CACTAAAGCTCATGTCTTACTTGAAGGAGTGGTCTTTGGTTCCTTCAAAGgtaaaatgat ... aaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAAT
actttgattcccttcattttcctgcgacatcctgatttctggtataaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATCAATTAACTGCCACGCCAGCTGCAAGATCCTTGTTGACAGAACTGAAGG
gtataac putative branch site (score: 26)
ttcatttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattgtattccatatgcttcactgtgtcacaatcacaactcaacaactttgattcccttcattttcctgcgacatcctgatttctggtataaccttgcagGTTGAGCTTGTTTGTAGGGTTTGCTTAGTGCTCCTTCAGACACATCACAATCAATTAACTGCCACGCCAGCTGCAAGATCCTTGTTGACAGAACTGAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - -gcttcac
- - - - - - - - - - - - - - - -atcacaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catcctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttctggt