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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaactccactacaaagaacatgatttcaaaaaaaagaaaatgcatgatatatacaaaaaaaaacttcaaagaacaatagtgtggtgcttctgcattgccaatgcttgcttgcttaccctctgctcaatgcaaaccgcagGCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG

Basic information

species Zea mays
transcript GRMZM5G877788_T04
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67015011|gb|CO443760.1|CO443760
EST:     CGGCCTCAGCTTCGCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTG                         GCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA
genomic: CGGCCTCAGCTTCGCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTGgtaactccac ... caaaccgcagGCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA
EST: gi|76926346|gb|DV170820.1|DV170820
EST:     CGGCCTCAGCTTCGCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTG                         GCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA
genomic: CGGCCTCAGCTTCGCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTGgtaactccac ... caaaccgcagGCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA
EST: gi|71427484|gb|DR808534.1|DR808534
EST:     CGGCCTCAGCTTCGCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTG                         GCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA
genomic: CGGCCTCAGCTTCGCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTGgtaactccac ... caaaccgcagGCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA
EST: gi|78084898|gb|DV513291.1|DV513291
EST:     CGGCCTCAGCTTTGCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTG                         GCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA
genomic: CGGCCTCAGCTTCGCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTGgtaactccac ... caaaccgcagGCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA
EST: gi|71428520|gb|DR809570.1|DR809570
EST:     GCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTG                         GCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA
genomic: GCGTCCAAGGACGTCGGCCAAGTCCTCACCGTCGCTGgtaactccac ... caaaccgcagGCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcttctgcattgccaatgcttgcttgcttaccctctgctcaatgcaaaccgcagGCGCCAGTCTCCTGGTGTACCAAATCTTCGCCTACCGTTGGGTCAACAAGATCCTCGGCCCAGTCAACTCAACCCGAGTTTCGTCG
                         tgcttac  putative branch site (score: 2)