1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtacggttcaattctccctcttcaaactggattttccagctctctttcttgctcatccaacctccataaccgaactcgaagcatggtcgtcctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGGCACACCATCTGCACGTCGATCGCGGTGGTGGGCGGCAGCATGCTGGCCT
species | Zea mays |
transcript | GRMZM5G872373_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGGEST: gi|213172903|gb|FM183104.1|FM183104
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGGEST: gi|148954539|gb|EC899976.2|EC899976
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGGEST: gi|213172917|gb|FM194792.1|FM194792
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGGEST: gi|74234157|gb|DT642071.1|DT642071
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGGEST: gi|91867347|gb|EB399652.1|EB399652
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
EST: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCG CTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
genomic: TGACCTTCTTGGCGGAGTGGGGCGACCGAAGTCAGATAGCTACAATAGCGgtacggttca ... ctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGG
tcttgctcatccaacctccataaccgaactcgaagcatggtcgtcctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGGCACACCATCTGCACGTCGATCGCGGTGGTGGGCGGCAGCATGCTGGCCT
ccataac putative branch site (score: 3)
tcgtcctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacggttcaattctccctcttcaaactggattttccagctctctttcttgctcatccaacctccataaccgaactcgaagcatggtcgtcctcaatgcagCTGGCGACCCACAAGAACGCGGTCGGAGTCGCTACGGGAGCGACCTTGGGGCACACCATCTGCACGTCGATCGCGGTGGTGGGCGGCAGCATGCTGGCCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG