1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...gtttagtgttactgttaccactgactaatactaatgcatgtatttgcatactaaggctttagtgagcacagaagattctgatattattttatccatatagGGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
species | Zea mays |
transcript | GRMZM5G871572_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GCAATACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAG GGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAGEST: gi|94474066|gb|EB703024.1|EB703024
genomic: GCAATACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAGgtgcctaact ... atccatatagGGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
EST: GCAATACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAG GGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAGEST: gi|211009140|gb|FL186793.1|FL186793
genomic: GCAATACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAGgtgcctaact ... atccatatagGGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
EST: GCAATACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAG GGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAGEST: gi|56691676|gb|CX129579.1|CX129579
genomic: GCAATACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAGgtgcctaact ... atccatatagGGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
EST: GCAATACAGCATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAG GGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAGEST: gi|29129978|gb|CB380682.1|CB380682
genomic: GCAATACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAGgtgcctaact ... atccatatagGGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
EST: ACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAG GGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAGEST: gi|78114654|gb|DV533042.1|DV533042
genomic: ACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAGgtgcctaact ... atccatatagGGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
EST: GCAATACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAG GGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
genomic: GCAATACAACATTTTCTAGAAAGAAAGCGCCGGCATGAACTGCAAAAAAGgtgcctaact ... atccatatagGGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
gcatactaaggctttagtgagcacagaagattctgatattattttatccatatagGGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
ttctgat putative branch site (score: 183)
ttttatcc putative PPT
aagattctgatattat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtttagtgttactgttaccactgactaatactaatgcatgtatttgcatactaaggctttagtgagcacagaagattctgatattattttatccatatagGGTTCTTAATGCAGCAGCACAAAGGCAAGCTAGAGAAGCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - tgttact
- - - - - - - - -ccactga
- - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - tgcatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gattctg