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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aaaacacgttacattttgagagtgggggaatactacataattaaatgcagtattgtgtcttcctgaaactattttgtgactgctacttctcttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAGAGCCGTGCCGTTCTACAGGGTGGTTGCCCTGCCGGAGGGCCACAGGCAG

Basic information

species Zea mays
transcript GRMZM5G862959_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78118927|gb|DV537311.1|DV537311
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|13126562|gb|BG317132.1|BG317132
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|78116253|gb|DV534640.1|DV534640
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|67011782|gb|CO440531.1|CO440531
EST:     CTCATCGTAAGAAGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACNGTGCTCTGCCGCANAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|78084340|gb|DV512733.1|DV512733
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|71332524|gb|DR803227.1|DR803227
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|13126563|gb|BG317133.1|BG317133
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|149071365|gb|EE159760.2|EE159760
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGTTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|148974313|gb|EE025086.2|EE025086
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|67025991|gb|CO454740.1|CO454740
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|113703551|gb|EE681055.1|EE681055
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|60345456|gb|DN212429.1|DN212429
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
EST: gi|60396327|gb|DN229196.1|DN229196
EST:     CTCATCGTAAGAGGAAGTCTGATGA                         TTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG
genomic: CTCATCGTAAGAGGAAGTCTGATGAgtaagttgtt ... cttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgcagtattgtgtcttcctgaaactattttgtgactgctacttctcttttgacagTTATATTCTGGAGTTCGATGACGATGAGGAGGACGGTGCTCTGCCGCAGAGAGCCGTGCCGTTCTACAGGGTGGTTGCCCTGCCGGAGGGCCACAGGCAG
                                  ctgctacttctctttt  CT-rich tract
                    aaactatttt  TA-rich tract