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...tggattagttattgtacctattggtttaactgtataattcatataagaaatttgtgactataaatgcctacccttccatttacatgagctatatctgcagGCGGCTGACCAAGAATTTGATCTTCCAGTCAAGGAGAAGGCAGACATATGCACTATAATGTATACTAGTGGAACTACTGGTGACCCAAAAGGAGTACTGA
species | Zea mays |
transcript | GRMZM5G861300_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TCCAAAAATATGGGCTATCAATTTACTCGTGGGATGAATTTCTGTCCCTG GCGGCTGACCAAGAATTTGATCTTCCAGTCAAGGAGAAGGCAGACATATGCEST: gi|148986409|gb|EE030148.2|EE030148
genomic: TCCAAAAATATGGGCTATCAATTTACTCGTGGGATGAATTTCTGTCCCTGgtaaggtact ... atatctgcagGCGGCTGACCAAGAATTTGATCTTCCAGTCAAGGAGAAGGCAGACATATGC
EST: TCCAAAAATATGGGCTATCAATTTACTCGTGGGATGAATTTCTGTCCCTG GCGGCTGACCAAGAATTTGATCTTCCAGTCAAGGAGAAGGCAGACATATGC
genomic: TCCAAAAATATGGGCTATCAATTTACTCGTGGGATGAATTTCTGTCCCTGgtaaggtact ... atatctgcagGCGGCTGACCAAGAATTTGATCTTCCAGTCAAGGAGAAGGCAGACATATGC
agaaatttgtgactataaatgcctacccttccatttacatgagctatatctgcagGCGGCTGACCAAGAATTTGATCTTCCAGTCAAGGAGAAGGCAGACATATGCACTATAATGTATACTAGTGGAACTACTGGTGACCCAAAAGGAGTACTGA
actataaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tggattagttattgtacctattggtttaactgtataattcatataagaaatttgtgactataaatgcctacccttccatttacatgagctatatctgcagGCGGCTGACCAAGAATTTGATCTTCCAGTCAAGGAGAAGGCAGACATATGCACTATAATGTATACTAGTGGAACTACTGGTGACCCAAAAGGAGTACTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - -ttcatat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catgagc