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...tcgtgtcaagtacttgactacatgtctattttttaactttactttttttacctgcatggattcctaacaacattgacttgttgtactcgctgttgtctagGTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGAATAGCCATGCGAACTCATTCAAAAGAGAACGCTGCCTCTGATGCAGCTT
species | Zea mays |
transcript | GRMZM5G855347_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGCAAGCATTATATCAACTTTGCAAGCGAAGGGACACAGAGTTGCAATG GTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGAEST: gi|5847391|gb|AW000470.1|AW000470
genomic: AAGCAAGCATTATATCAACTTTGCAAGCGAAGGGACACAGAGTTGCAATGgtaatgaaat ... tgttgtctagGTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGA
EST: AAGCAAGCATTATATCAACTTTGCAAGCGAAGGGACACAGAGTTGCAATG GTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGAEST: gi|60336693|gb|DN203666.1|DN203666
genomic: AAGCAAGCATTATATCAACTTTGCAAGCGAAGGGACACAGAGTTGCAATGgtaatgaaat ... tgttgtctagGTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGA
EST: AAGCAAGCATTATATCAACTTTGCAAGCGAAGGGACACAGAGTTGCAATG GTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGAEST: gi|60358034|gb|DN225007.1|DN225007
genomic: AAGCAAGCATTATATCAACTTTGCAAGCGAAGGGACACAGAGTTGCAATGgtaatgaaat ... tgttgtctagGTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGA
EST: AAGCAAGCATTATATCAACTTTGCAAGCGAAGGGACACAGAGTTGCAATG GTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGAEST: gi|32832471|gb|CD972149.1|CD972149
genomic: AAGCAAGCATTATATCAACTTTGCAAGCGAAGGGACACAGAGTTGCAATGgtaatgaaat ... tgttgtctagGTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGA
EST: CGAAGGGACACAGAGTTGCAATG GTTGGTGATGGAATAAACGATGCNCCGTCTTTAGCAGCCGCAGATGTTGGA
genomic: CGAAGGGACACAGAGTTGCAATGgtaatgaaat ... tgttgtctagGTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcgtgtcaagtacttgactacatgtctattttttaactttactttttttacctgcatggattcctaacaacattgacttgttgtactcgctgttgtctagGTTGGTGATGGAATAAACGATGCCCCGTCTTTAGCAGCCGCAGATGTTGGAATAGCCATGCGAACTCATTCAAAAGAGAACGCTGCCTCTGATGCAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - -gtacttg
- - - - - - - - -ctacatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -aacaaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgttgta