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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatcacatcttatctgcacacttctttacttgtgttgtagcaacggcccacctgaccgacatttgagattgacgtagttagctcactccgaatcctattgtgcagAATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTCCGGGTGCTCCTTAGTAAGGTTATTGCGGATGTTGTCTACCAATGGATGT

Basic information

species Zea mays
transcript GRMZM5G855200_T02
intron # 8
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31356220|gb|CD440577.1|CD440577
EST:     TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCG                         AATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC
genomic: TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCGgtatgtatca ... tattgtgcagAATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC
EST: gi|213173945|gb|FM183429.1|FM183429
EST:     TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCG                         AATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC
genomic: TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCGgtatgtatca ... tattgtgcagAATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC
EST: gi|67014422|gb|CO443171.1|CO443171
EST:     TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCG                         AATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC
genomic: TTTTATTATCTAAGGAGAGCATTGTGATTAGGAGACTTATTATGACAGCGgtatgtatca ... tattgtgcagAATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cctgaccgacatttgagattgacgtagttagctcactccgaatcctattgtgcagAATGCAAAATCTCTTGCCCGTGATCTGATCTCCAGAGATGCTTTGATGTTCCGGGTGCTCCTTAGTAAGGTTATTGCGGATGTTGTCTACCAATGGATGT
                             agctcac  putative branch site (score: 3)
                                          tcctatt  putative PPT