1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
gtaagtttttgaattttagaagtcagaactcatgttgatgaacttcctgaggttattgggggctaatttattgtttctatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAG
species | Zea mays |
transcript | GRMZM5G846548_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCA CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCACEST: gi|18654522|gb|BM499327.1|BM499327
genomic: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
EST: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCA CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCACEST: gi|18649151|gb|BM497970.1|BM497970
genomic: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
EST: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCA CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCACEST: gi|88755251|gb|DY539392.1|DY539392
genomic: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
EST: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCA CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCACEST: gi|18648891|gb|BM497710.1|BM497710
genomic: TTCATCGTTGATAGTTATAATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
EST: AATGTGCTTAGGCAGCCTGTCTAGGTCATTCA CTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
genomic: AATGTGCTTAGGCAGCCTGTCTAGGTCATTCAgtaagttttt ... tatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCAC
tgttgatgaacttcctgaggttattgggggctaatttattgtttctatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAG
ggctaat putative branch site (score: 3)
ttgtttct putative PPT
taatttattgtttcta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtttttgaattttagaagtcagaactcatgttgatgaacttcctgaggttattgggggctaatttattgtttctatgttctagCTGGTGTTGCTAGTGGAGCAACTAGAGCAGCACTAACGCAGCATTTTGCACTTGCAAATAATGCAGCTGATATTTCTGCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG