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gtgagtcgatcgatcgatctttcactatagatctccaccagtacaaaaatgaatgaacgtatgcatgcggccgtttacatatgacgaaggatgatggtactgttgatagctttatactgcaacgactaaaacacactactcgctgatcgatgctgatggtttgcttttattaacagTATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTACCCTGCTGACGAGAAGAACCCAAACGGAAAGCTCCG
species | Zea mays |
transcript | GRMZM5G836250_T02 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAG TATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTAEST: gi|148932776|gb|EE285437.2|EE285437
genomic: AAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAGgtgagtcgat ... ttattaacagTATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTA
EST: AAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAG TATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTAEST: gi|78106829|gb|DV525247.1|DV525247
genomic: AAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAGgtgagtcgat ... ttattaacagTATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTA
EST: AAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAG TATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTAEST: gi|74244032|gb|DT651946.1|DT651946
genomic: AAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAGgtgagtcgat ... ttattaacagTATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTA
EST: A-GTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAG TATGGTTGCTGACGTGCACCGTACCCTGCTATACGGCGGGTGTGTTTTTGT
genomic: AAGTACCCCAAAGATGGCTCGCCACCAAGATCTTTGAGATACATTGGAAGgtgagtcgat ... ttattaacagTATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGG-TGTGTTTTTGT
acgactaaaacacactactcgctgatcgatgctgatggtttgcttttattaacagTATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTACCCTGCTGACGAGAAGAACCCAAACGGAAAGCTCCG
tttgctttt CT-rich tract
tttgcttttattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtcgatcgatcgatctttcactatagatctccaccagtacaaaaatgaatgaacgtatgcatgcggccgtttacatatgacgaaggatgatggtactgttgatagctttatactgcaacgactaaaacacactactcgctgatcgatgctgatggtttgcttttattaacagTATGGTTGCTGACGTGCACCGTACCTTGCTATACGGCGGTGTGTTTTTGTACCCTGCTGACGAGAAGAACCCAAACGGAAAGCTCCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC