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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttctctagttccatgtttctaacttatgtttcattttgaagtcctaagctttcacaaggtgattacacccgttcacttttctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGCTAATGCTGGTGAAGAGAAACAGATTCTGGACACTAAGGTTGACCTGTC

Basic information

species Zea mays
transcript GRMZM5G835213_T02
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G835213_T02 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os11g40510.1 (Oryza sativa), 3'ss of exon 8
gtgtgttctctagttccatgtttctaacttatgtttcattt-tgaagtcctaagctttcacaaggtgattacacccgttcacttttc-tactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGCTAATGCTGGTGAAGAGAAACAGATTCTGGACACTAAGGTTGACCTGTC
||| ||  | |   ||||||||| |  |  |||  ||| |  | |     | || | |  | |  |||| |   | | | ||||||| |     ||||||||||||| || ||||||||| ||||||||||||||||||| || |||||||||||||||||||||||||| | |   ||| | |||| |    |   
gtgagtctttt---tccatgtttgttgcc-atgcctcactagtcattaggttagttctagctacctgatcatttctgcttacttttcattgcttcagGGAAGTGGCTCGGCAACCGTCAAGTTCGTTGCAATTGGGCAACAAAGGGTGCTAATGCTGGTGAAGAGAAACAAAATACAGACTCCAAGGGTATGATAGA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|31361403|gb|CD445760.1|CD445760
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71328163|gb|DR800724.1|DR800724
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|24934275|gb|CA452493.1|CA452493
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|76916928|gb|DV166611.1|DV166611
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149098620|gb|EE184625.2|EE184625
EST:     AATGACTTG-ATGG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGT
genomic: AATGACTTGAAT-Ggtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGT
EST: gi|71449843|gb|DR830893.1|DR830893
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|50328157|gb|CO523283.1|CO523283
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAAC
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAAC
EST: gi|149005281|gb|EE039830.2|EE039830
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71436375|gb|DR817425.1|DR817425
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|26456718|gb|CA828301.1|CA828301
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTT-GTAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71764597|gb|DR962534.1|DR962534
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|148944552|gb|EC889676.2|EC889676
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149096874|gb|EE182668.2|EE182668
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|22546594|gb|BU098905.1|BU098905
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71428352|gb|DR809402.1|DR809402
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|148965511|gb|EE016330.2|EE016330
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|93013850|gb|EB639370.1|EB639370
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGG
EST: gi|71760191|gb|DR958128.1|DR958128
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|93012834|gb|EB638354.1|EB638354
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149098619|gb|EE184624.2|EE184624
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|22545671|gb|BU098030.1|BU098030
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|148938880|gb|EC883234.2|EC883234
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|94475248|gb|EB704206.1|EB704206
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71324258|gb|DR798829.1|DR798829
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149111090|gb|EE294586.2|EE294586
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|148972836|gb|EE023824.2|EE023824
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCATTTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|29544652|gb|CB605032.1|CB605032
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|148961382|gb|EE012120.2|EE012120
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|211492468|gb|FL234470.1|FL234470
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|211492467|gb|FL234469.1|FL234469
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149103764|gb|EE289171.2|EE289171
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149104833|gb|EE290297.2|EE290297
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149095084|gb|EE180690.2|EE180690
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71431558|gb|DR812608.1|DR812608
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149073417|gb|EE161721.2|EE161721
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71317247|gb|DR795307.1|DR795307
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|194717059|gb|FK934212.1|FK934212
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71773943|gb|DR971831.1|DR971831
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|5268356|gb|AI770320.1|AI770320
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149079527|gb|EE168509.2|EE168509
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71756632|gb|DR954569.1|DR954569
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149104834|gb|EE290298.2|EE290298
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149004891|gb|EE039402.2|EE039402
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|149084914|gb|EE174423.2|EE174423
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|26456698|gb|CA828281.1|CA828281
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTT-GTAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|32850339|gb|CD990020.1|CD990020
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71439176|gb|DR820226.1|DR820226
EST:     CAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: CAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|32866442|gb|CF006124.1|CF006124
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
EST: gi|71431559|gb|DR812609.1|DR812609
EST:     GATGCTCAAAGTGCGATAAATGACTTGAATG                         GGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG
genomic: GATGCTCAAAGTGCGATAAATGACTTGAATGgtgtgttctc ... ctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgaagtcctaagctttcacaaggtgattacacccgttcacttttctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGCTAATGCTGGTGAAGAGAAACAGATTCTGGACACTAAGGTTGACCTGTC
                                cccgttcacttttct  CT-rich tract
                                         ttttcta  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtgtgttctctagttccatgtttctaacttatgtttcattttgaagtcctaagctttcacaaggtgattacacccgttcacttttctactggcagGGAAGTGGCTTGGGAACCGTCAAATTCGTTGCAATTGGGCAACGAAAGGTGCTAATGCTGGTGAAGAGAAACAGATTCTGGACACTAAGGTTGACCTGTC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA