1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaggaccgatcatgcaccattttctttcagaacggtggtatgcagcctcttacagaattctatccttactaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCGTCGTTCCGATCCATGCCCGAGGACAAGCTGCGGCGGCCGCTGACCATC
species | Zea mays |
transcript | GRMZM5G834205_T03 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|211390577|gb|FL303486.1|FL303486
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|78077690|gb|DV506124.1|DV506124
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|149050347|gb|EE155591.2|EE155591
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|84970062|gb|DW468434.1|DW468434
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|37375076|gb|CF623952.1|CF623952
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCACTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|71302875|gb|DR787549.1|DR787549
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|71761883|gb|DR959820.1|DR959820
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|86472430|gb|DY238800.1|DY238800
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|48690727|gb|CO049262.1|CO049262
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCACTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|50325059|gb|CO520185.1|CO520185
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|211390578|gb|FL303487.1|FL303487
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|37394180|gb|CF634361.1|CF634361
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCACTGTCGCAGGACTACACAGATGACCTGGTGCCEST: gi|76291817|gb|DV031385.1|DV031385
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
EST: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAG ACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
genomic: AATATAAAGGAAGAAGAGGAGGAAGAGGATGCTGAAAGTCTCTATCGGAGgtaggaccga ... actaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCC
tctttcagaacggtggtatgcagcctcttacagaattctatccttactaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCGTCGTTCCGATCCATGCCCGAGGACAAGCTGCGGCGGCCGCTGACCATC
tactaaa putative branch site (score: 1)
tccttact CT-rich tract
ttactaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggaccgatcatgcaccattttctttcagaacggtggtatgcagcctcttacagaattctatccttactaaaacagACTGCGGAAGGGGAAGGCGCTGTCGCAGGACTACACAGATGACCTGGTGCCGTCGTTCCGATCCATGCCCGAGGACAAGCTGCGGCGGCCGCTGACCATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC