1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...taatagtggaattagctgacaaacatagtactcttcagttgccactttgttatttgcatgtctccctgtgtgatatttgtctcctgttttactggtgcagGGTATGTACCCTCGCTGAAGGATGGAAACTCACAAGAGACAATATTTAATCCACCTTGGCGACATGAGCCAGTTGCAATAG
species | Zea mays |
transcript | GRMZM5G833124_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCTGAATAGGGCAAGGTTCACTGTGGCTGTGGATTCTTTCATCAGGACTG GGTATGTACCCTCGCTGAAGGATGGAAACTCACAAGAGACAATATTTAATCEST: gi|60356183|gb|DN223156.1|DN223156
genomic: CCTGAATAGGGCAAGGTTCACTGTGGCTGTGGATTCTTTCATCAGGACTGgtatgtcaac ... actggtgcagGGTATGTACCCTCGCTGAAGGATGGAAACTCACAAGAGACAATATTTAATC
EST: CCTGAATAGGGCAAGGTTCACTGTGGCTGTGGATTCTTTCATCAGGACTG GGTATGTACCCTCGCTGAAGGATGGAAACTCACAAGAGACAATATTTAATCEST: gi|32810114|gb|CD962348.1|CD962348
genomic: CCTGAATAGGGCAAGGTTCACTGTGGCTGTGGATTCTTTCATCAGGACTGgtatgtcaac ... actggtgcagGGTATGTACCCTCGCTGAAGGATGGAAACTCACAAGAGACAATATTTAATC
EST: CCTGAATAGGGCAAGGTTCACTGTGGCTGTGGATTCTTTCATCAGGACTG GGTATGGTACCCTCGCTGAAGGATGGAAACTCACAAGAGACAATATTTA
genomic: CCTGAATAGGGCAAGGTTCACTGTGGCTGTGGATTCTTTCATCAGGACTGgtatgtcaac ... actggtgcagGGTATG-TACCCTCGCTGAAGGATGGAAACTCACAAGAGACAATATTTA
tttgttatttgcatgtctccctgtgtgatatttgtctcctgttttactggtgcagGGTATGTACCCTCGCTGAAGGATGGAAACTCACAAGAGACAATATTTAATCCACCTTGGCGACATGAGCCAGTTGCAATAG
tctcctgttttact CT-rich tract
tgatattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taatagtggaattagctgacaaacatagtactcttcagttgccactttgttatttgcatgtctccctgtgtgatatttgtctcctgttttactggtgcagGGTATGTACCCTCGCTGAAGGATGGAAACTCACAAGAGACAATATTTAATCCACCTTGGCGACATGAGCCAGTTGCAATAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - gctgaca
- - - - - - - - - - - - - - - - - -cagttgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - tgcatgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ccctgtg