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gttaataatcacaatatccctttcgagctaataattttggcgtgggagtaattaattttcaactgaccattaaaatttatgcgaattcagGAAAAGTATCAGTTGCGCTTAAAAGTTTTAGAAGATGGCTTGAGGGGCACTCCAAGTGGATCTTGTCGTCCTTCCATGGAAGGAAAATGTATAAGTAATG
species | Zea mays |
transcript | GRMZM5G832989_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ACAAACTTGCTATTGCAGAGAGAACTGCTCGATCGGAAGCTCAATTAAAG GAAAAGTATCAGTTGCGCTTAAAAGTTTTAGAAGATGGCTTGAGGGGCACTEST: gi|61119815|gb|DN560776.1|DN560776
genomic: ACAAACTTGCTATTGCAGAGAGAACTGCTCGATCGGAAGCTCAATTAAAGgttaataatc ... gcgaattcagGAAAAGTATCAGTTGCGCTTAAAAGTTTTAGAAGATGGCTTGAGGGGCACT
EST: ACAAACTTGCTATTGCAGAGAGAACTGCTCGATCGGAAGCTCAATTAAAG GAAAAGTATCAGTTGCGCTTAAAAGTTTTAGAAGATGGCTTGAGGGGCACTEST: gi|67041884|gb|CO468139.1|CO468139
genomic: ACAAACTTGCTATTGCAGAGAGAACTGCTCGATCGGAAGCTCAATTAAAGgttaataatc ... gcgaattcagGAAAAGTATCAGTTGCGCTTAAAAGTTTTAGAAGATGGCTTGAGGGGCACT
EST: ACAAACTTGCTATTGCAGAGAGAACTGCTCGATCGGAAGCTCAATTAAAG GAAAAGTATCAGTTGCGCTTAAAAGTTTTAGAAGATGGCTTGAGGGGCACT
genomic: ACAAACTTGCTATTGCAGAGAGAACTGCTCGATCGGAAGCTCAATTAAAGgttaataatc ... gcgaattcagGAAAAGTATCAGTTGCGCTTAAAAGTTTTAGAAGATGGCTTGAGGGGCACT
tttggcgtgggagtaattaattttcaactgaccattaaaatttatgcgaattcagGAAAAGTATCAGTTGCGCTTAAAAGTTTTAGAAGATGGCTTGAGGGGCACTCCAAGTGGATCTTGTCGTCCTTCCATGGAAGGAAAATGTATAAGTAATG
aactgac putative branch site (score: 26)
agtaattaattttcaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaataatcacaatatccctttcgagctaataattttggcgtgggagtaattaattttcaactgaccattaaaatttatgcgaattcagGAAAAGTATCAGTTGCGCTTAAAAGTTTTAGAAGATGGCTTGAGGGGCACTCCAAGTGGATCTTGTCGTCCTTCCATGGAAGGAAAATGTATAAGTAATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA