1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' |
...acatgacatgtttttgaagtaggtcactagtaacatgttagaacagatgacagcataattgatgcacaaaacaaatttgacatcttgttgtgcaccttagGTTGGACAGAAAGCTGAACAAAGAGAGTAATGAAAACATGGATAACAGAAAGTTGCAACATGAGGATAAT
species | Zea mays |
transcript | GRMZM5G829738_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: CCAACATCTGATTATCTGTCAGATAGACCCTTGTCCAATGATGAAAACAG GTTGGACAGAAAGCTGAACAAAGAGAGTAATGAAAACATGGATAACAGAAAEST: gi|211390375|gb|FL405396.1|FL405396
genomic: CCAACATCTGATTATCTGTCAGATAGACCCTTGTCCAATGATGAAAACAGgtacaaagtc ... tgcaccttagGTTGGACAGAAAGCTGAACAAAGAGAGTAATGAAAACATGGATAACAGAAA
EST: CCAACATCTGATTATCTGTCAGATAGACCCTTGTCCAATGATGAAAACAG GTTGGACAGAAAGCTGAACAAAGAGAGTAATGAAAACATGGATAACAGAAAEST: gi|74234144|gb|DT642058.1|DT642058
genomic: CCAACATCTGATTATCTGTCAGATAGACCCTTGTCCAATGATGAAAACAGgtacaaagtc ... tgcaccttagGTTGGACAGAAAGCTGAACAAAGAGAGTAATGAAAACATGGATAACAGAAA
EST: CCAACATCTGATTATCTGTCAGATAGACCCTTGTCCAATGATGAAAACAG GTTGGACAGAAAGCTGAACAAAGAGAGTAATGAAAACATGGATAACAGAAA
genomic: CCAACATCTGATTATCTGTCAGATAGACCCTTGTCCAATGATGAAAACAGgtacaaagtc ... tgcaccttagGTTGGACAGAAAGCTGAACAAAGAGAGTAATGAAAACATGGATAACAGAAA
gatgacagcataattgatgcacaaaacaaatttgacatcttgttgtgcaccttagGTTGGACAGAAAGCTGAACAAAGAGAGTAATGAAAACATGGATAACAGAAAGTTGCAACATGAGGATAAT
atttgac putative branch site (score: 162)
aaaacaaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acatgacatgtttttgaagtaggtcactagtaacatgttagaacagatgacagcataattgatgcacaaaacaaatttgacatcttgttgtgcaccttagGTTGGACAGAAAGCTGAACAAAGAGAGTAATGAAAACATGGATAACAGAAAGTTGCAACATGAGGATAAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT
- - - catgttt
- - - - - - - - - - - - - - - - -catgtta
- - - - - - - - - - - - - - - - - - - - gaacaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gatgcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaacaaa