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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtctacttccttggtcattcgagcaacatcatgaccatttccttaatgttatttttttctgtcttcgttgtgttcactttgcacactttattttgctttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA

Basic information

species Zea mays
transcript GRMZM5G825902_T01
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G825902_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os12g05650.1 (Oryza sativa), 3'ss of exon 9
gtctacttccttggtcattcgagcaacatcatgaccatttccttaatgttatttttttctgtcttcgttgtgtt-cactt-tgcacactttattttgctttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA
                |||  |    | | || || | || ||   |   || |||     |||  |     |   |||| |  |    |||   |||  |  ||||||| |||    |||||| |||||||||| ||||| ||||| |||||||||||||||||||| ||||| || ||     |    |||    |       |  |
--------------gtattgcaatgccttgattactactttct-gttaaaatctttggtcatctcagcaacatcatacttatatatctcttaacatgccatc-atatagGTGCTCGTGAATTGCTTGCGTTATTATCTCCGGAGGCCCGAGACAGATGAAGACAGCTACTGATTCTTATGAAAACCCGGGCTTTGAGTTCCTTTCTGCA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|32859294|gb|CD998975.1|CD998975
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5846978|gb|AW000057.1|AW000057
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211056798|gb|FL037810.1|FL037810
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60394392|gb|DN227262.1|DN227262
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211056797|gb|FL037809.1|FL037809
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6194531|gb|AW146635.1|AW146635
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5762240|gb|AI967288.1|AI967288
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|40485703|gb|CK394697.1|CK394697
EST:     GTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60354178|gb|DN221151.1|DN221151
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATATCAG                         GCGCTGTCCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|60394317|gb|DN227187.1|DN227187
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|16922165|gb|BM075455.1|BM075455
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|71762075|gb|DR960012.1|DR960012
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5915218|gb|AW052859.1|AW052859
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5871577|gb|AW018048.1|AW018048
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5846763|gb|AI999846.1|AI999846
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6031251|gb|AW076258.1|AW076258
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5597232|gb|AI891225.1|AI891225
EST:     AGTTTCATGTAAGTTCCAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5296356|gb|AI783126.1|AI783126
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5006113|gb|AI712175.1|AI712175
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|24934311|gb|CA452529.1|CA452529
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5915187|gb|AW052828.1|AW052828
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31356321|gb|CD440678.1|CD440678
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGC-TGCGTTATTACC
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACC
EST: gi|18177029|gb|BM378239.1|BM378239
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|32859012|gb|CD998693.1|CD998693
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6827302|gb|AW330945.1|AW330945
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|24767769|gb|CA402905.1|CA402905
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31353042|gb|CD437399.1|CD437399
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|148950230|gb|EC895780.2|EC895780
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATTTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5871067|gb|AW017508.1|AW017508
EST:     AGTTTCATGTAAGTTCCAGAGGTGGAAAATTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6194493|gb|AW146597.1|AW146597
EST:     TTTCATGTAAGTTACAGAGGTNNGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: TTTCATGTAAGTTACAGAGGT--GGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|194716957|gb|FK934116.1|FK934116
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5739701|gb|AI947277.1|AI947277
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|16927072|gb|BM080141.1|BM080141
EST:     AGTTTCATGTAAGTTACAGAGGGGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|32859295|gb|CD998976.1|CD998976
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211399224|gb|FL447437.1|FL447437
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5871038|gb|AW017614.1|AW017614
EST:     AGTTTCATGTAAGTTCCAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|31360452|gb|CD444809.1|CD444809
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAN                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|16927075|gb|BM080144.1|BM080144
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|4775819|gb|AI664824.1|AI664824
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCGATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|166428057|gb|EG077617.1|EG077617
EST:     GGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5296224|gb|AI782904.1|AI782904
EST:     ACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCCAAGGCCTGAGACAGATGAA
genomic: ACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|149074677|gb|EE163095.2|EE163095
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|5929057|gb|AW056349.1|AW056349
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACT-AACAGCTCCTTATTTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6031249|gb|AW076256.1|AW076256
EST:     GTTTCCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: GTTT-CATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|8929966|gb|BE224730.1|BE224730
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCCCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|211335494|gb|FL454139.1|FL454139
EST:     TTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: TTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
EST: gi|6031454|gb|AW076356.1|AW076356
EST:     AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAG                         GCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA
genomic: AGTTTCATGTAAGTTACAGAGGTGGAAAACTAAACAGCTCCTTATCTCAGgtctacttcc ... ttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttctgtcttcgttgtgttcactttgcacactttattttgctttttatatagGCGCTGACCAATTGCCTGCGTTATTACCTCCGAAGGCCTGAGACAGATGAAGACAGCTATTGATTGTTGTGTTTGTCGAACCTTCCTATAGTGCATTAGA
                                 ctttattttgcttttt  CT-rich tract
                                actttattttgctttt  TA-rich tract