1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...tgcatccgcacagttttcctgccgatgttactacctgtgcaatgtctacacggaccactttctttgggcctgaccgctgtgttgcttgttctgatgccagTTACCAACTCACAAGAGGCGCAAGAAGATGGAGAGAGAAGCATACAAGGACTGGAAGTCGTCCGTTCTCTCCTCGAACAAGAAAACCAAACCAG
species | Zea mays |
transcript | GRMZM5G825512_T01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: ATTCATCTGCATCCGATGAATCCTCAGACAACGATCAAGACGAGCTAGAT TTACCAACTCACAAGAGGCGCAEST: gi|149098294|gb|EE184262.2|EE184262
genomic: ATTCATCTGCATCCGATGAATCCTCAGACAACGATCAAGACGAGCTAGATgtatgtacct ... ctgatgccagTTACCAACTCACAAGAGGCGCA
EST: ATTCATCTGCATCCGATGAATCCTCAGACAACGATCAAGACGAGCTAGAT TTACCAACTCACAAGAGGCGCAAGAAGATGGAGAGAGAAGCATACAAGGACEST: gi|148954921|gb|EC900409.2|EC900409
genomic: ATTCATCTGCATCCGATGAATCCTCAGACAACGATCAAGACGAGCTAGATgtatgtacct ... ctgatgccagTTACCAACTCACAAGAGGCGCAAGAAGATGGAGAGAGAAGCATACAAGGAC
EST: ATTCATTTGCATCCGATGAATCCTCAGACAACGATCAAGGCGAGCTAGAT TTTCCAACTCCCAAGAGGCGCAAGAAGATGGAGAGAGAAGCATACAAGGAC
genomic: ATTCATCTGCATCCGATGAATCCTCAGACAACGATCAAGACGAGCTAGATgtatgtacct ... ctgatgccagTTACCAACTCACAAGAGGCGCAAGAAGATGGAGAGAGAAGCATACAAGGAC
ctacacggaccactttctttgggcctgaccgctgtgttgcttgttctgatgccagTTACCAACTCACAAGAGGCGCAAGAAGATGGAGAGAGAAGCATACAAGGACTGGAAGTCGTCCGTTCTCTCCTCGAACAAGAAAACCAAACCAG
ttctgat putative branch site (score: 11)
cttgttct CT-rich tract
tttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgcatccgcacagttttcctgccgatgttactacctgtgcaatgtctacacggaccactttctttgggcctgaccgctgtgttgcttgttctgatgccagTTACCAACTCACAAGAGGCGCAAGAAGATGGAGAGAGAAGCATACAAGGACTGGAAGTCGTCCGTTCTCTCCTCGAACAAGAAAACCAAACCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
tgcatcc
- - - - - - - - tcctgcc
- - - - - - - - - - - - -tgttact
- - - - - - - - - - - - - - - - -cctgtgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - accgctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttgct